TCONS_00038833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038833
Unique NameTCONS_00038833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038833 ID=TCONS_00038833|Name=TCONS_00038833|organism=Clytia hemisphaerica|type=transcript|length=240bp
CAAACAACTCCGTATCTTATGCATAAACTTTTGTAGTATCTGGGACAAGA
AAGAACTCCTTGAAGATGCGCTATTTGATGATAACATTGATGTTATCATT
GGATCTGAAACCCACTTAGATCCCTGTATAAAGGATAAAGAATTTTTACC
TGAAACATACAAGTGCTTTCGCCGTGACAGAATAAAAGATAACTCCAAAG
GTGGTGCGATCATAATTGTTAAAAGAGAACTCATTGCAGA
Run BLAST on NCBI

transcript from alignment at sc0001943:3789..4028

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038833 ID=TCONS_00038833|Name=TCONS_00038833|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at sc0001943:3789..4028 (Clytia hemisphaerica)
TCTGCAATGAGTTCTCTTTTAACAATTATGATCGCACCACCTTTGGAGTT
ATCTTTTATTCTGTCACGGCGAAAGCACTTGTATGTTTCAGGTAAAAATT
CTTTATCCTTTATACAGGGATCTAAGTGGGTTTCAGATCCAATGATAACA
TCAATGTTATCATCAAATAGCGCATCTTCAAGGAGTTCTTTCTTGTCCCA
GATACTACAAAAGTTTATGCATAAGATACGGAGTTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023314XLOC_023314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038833-exon-sc0001943-1491911889:3789..4028TCONS_00038833-exon-sc0001943-1491911889:3789..4028Clytia hemisphaericaexon
TCONS_00038833-exon-sc0001943-1510915933:3789..4028TCONS_00038833-exon-sc0001943-1510915933:3789..4028Clytia hemisphaericaexon
TCONS_00038833-exon-sc0001943-1575043694:3789..4028TCONS_00038833-exon-sc0001943-1575043694:3789..4028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001943supercontigsc0001943:3789..4028 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.49724	4.38551	5.51868	5.99706	4.85182	3.83397	3.46914	3.24777	0	1.87768	0.91126	1.19805	1.79458	0	0	2.19239	0.675211	1.38414	0.956132	0	0.869636	0	2.2049	1.87518	1.93139	2.58558	1.23332	2.63247	0.998316	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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