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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038831 ID=TCONS_00038831|Name=TCONS_00038831|organism=Clytia hemisphaerica|type=transcript|length=1274bp
AACCCATTGTGCTGAACTGTTATATGGAGATAGATACCCACATCCTCCAG
TTTCAAAAGATACTTTTGTTGAATTAACCAAACTATGCAGTCTAAATGTC
TTAATGCTAACACCTCGAGGATACTACCGACAAACTGACGGGCTAGCGAT
GGGTAGTCCCCCAGCTCCTTATTTGGCAAATGGTTGGCTCAGTCAATTTG
ATGGAAAAATCAAAGGAGAAGCGCAAATCTTTGGAAGGTATATGGATGAT
ATATTACgtaatatcaaaacaaaccagatcgaaaacaaactaaatgaaat
aaatgaattccatccaaatctaaaATTTACTTGCGAACGCGAGGATAAAG
GTAGTATTCCATTTTTAGACACGAGGATAATACATTCTGGAAATGAATTA
ACATCGACATGGTACACGAAAAATACTGATACTGGTTTAACAATGAACTT
CCATGCACTGGCACCGATCAAGTACAAGAAGTCCAATGTCACCGGGATGG
TATATCGAATTCATCGTGCTTGCAGTacacctgaaaatttcaaataaagc
atcGAAAAAGCAAAATCCATATTACGAAAGAATCAATATCCTCCTTCATT
TTACGAACCACTTATTAAAAAGACCATTGAAAAGATCACAAAACCTCCGC
AAACAGAAGAACAAATGGATGAGGAACcagaaatgaaaaagttttttctt
cgaTATCGTGGTAAAATTACCGAGCAGTTTCAACATTCATTAAAAAGGGT
CGGTGCTCCAGTGAAAGTTATTTTAACGATACGAAAACTTAAAACGTTGT
TACCATCATTGAAAACACCTGTTGAAAAAGAATANATCGAGGTAAAATTA
CCGAGCAGTTTCAACATTCATTAAAAAGGGTCGGTGCTCCAGTGAAAGTT
ATTTTAACGATACGAAAACTTAAAACGTTGTTACCATCATTGAAAACACC
TGTTGAAAAAGAATACAAAAGTTGGGTAGTTTATCAGATAAATTGTTCAC
GCTGTCAGTCGTGTTATGTTGGGCAAACAGCCAGACATCCACTATCCCGT
ATTCGAGAGCACAGGGATGCTAATACACCAGTGGGAAGCCATTTTCGTAG
CTGTAATGTTGAACTTAAAATGGATGATGTCAAAATAATTGCACAATCAG
CTAAATCGGAATTTCATCTTATGGCCCTTGAGGCCTTATGCATTCAAGCC
ATTAAGCCTTCTTTAAACACAAAGGATGAGTTCAAAAGTAGAACACTTGT
CTTGAGAATTTGAATTGTCATGGG Run BLAST on NCBI protein sequence of TCONS_00038831-protein >TCONS_00038831-protein ID=TCONS_00038831-protein|Name=TCONS_00038831-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
THCAELLYGDRYPHPPVSKDTFVELTKLCSLNVLMLTPRGYYRQTDGLAM
GSPPAPYLANGWLSQFDGKIKGEAQIFGRYMDDILRNIKTNQIENKLNEI
NEFHPNLKFTCEREDKGSIPFLDTRIIHSGNELTSTWYTKNTDTGLTMNF
HALAPIKYKKSNVTGMVYRIHRACSTPENFK Run BLAST on NCBI transcript from alignment at sc0001942:32129..33402 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038831 ID=TCONS_00038831|Name=TCONS_00038831|organism=Clytia hemisphaerica|type=transcript|length=1274bp|location=Sequence derived from alignment at sc0001942:32129..33402 (Clytia hemisphaerica)
CCCATGACAATTCAAATTCTCAAGACAAGTGTTCTACTTTTGAACTCATC
CTTTGTGTTTAAAGAAGGCTTAATGGCTTGAATGCATAAGGCCTCAAGGG
CCATAAGATGAAATTCCGATTTAGCTGATTGTGCAATTATTTTGACATCA
TCCATTTTAAGTTCAACATTACAGCTACGAAAATGGCTTCCCACTGGTGT
ATTAGCATCCCTGTGCTCTCGAATACGGGATAGTGGATGTCTGGCTGTTT
GCCCAACATAACACGACTGACAGCGTGAACAATTTATCTGATAAACTACC
CAACTTTTGTATTCTTTTTCAACAGGTGTTTTCAATGATGGTAACAACGT
TTTAAGTTTTCGTATCGTTAAAATAACTTTCACTGGAGCACCGACCCTTT
TTAATGAATGTTGAAACTGCTCGGTAATTTTACCTCGATNTATTCTTTTT
CAACAGGTGTTTTCAATGATGGTAACAACGTTTTAAGTTTTCGTATCGTT
AAAATAACTTTCACTGGAGCACCGACCCTTTTTAATGAATGTTGAAACTG
CTCGGTAATTTTACCACGATAtcgaagaaaaaactttttcatttctgGTT
CCTCATCCATTTGTTCTTCTGTTTGCGGAGGTTTTGTGATCTTTTCAATG
GTCTTTTTAATAAGTGGTTCGTAAAATGAAGGAGGATATTGATTCTTTCG
TAATATGGATTTTGCTTTTTCgatgctttatttgaaattttcaggtgtAC
TGCAAGCACGATGAATTCGATATACCATCCCGGTGACATTGGACTTCTTG
TACTTGATCGGTGCCAGTGCATGGAAGTTCATTGTTAAACCAGTATCAGT
ATTTTTCGTGTACCATGTCGATGTTAATTCATTTCCAGAATGTATTATCC
TCGTGTCTAAAAATGGAATACTACCTTTATCCTCGCGTTCGCAAGTAAAT
tttagatttggatggaattcatttatttcatttagtttgttttcgatctg
gtttgttttgatattacGTAATATATCATCCATATACCTTCCAAAGATTT
GCGCTTCTCCTTTGATTTTTCCATCAAATTGACTGAGCCAACCATTTGCC
AAATAAGGAGCTGGGGGACTACCCATCGCTAGCCCGTCAGTTTGTCGGTA
GTATCCTCGAGGTGTTAGCATTAAGACATTTAGACTGCATAGTTTGGTTA
ATTCAACAAAAGTATCTTTTGAAACTGGAGGATGTGGGTATCTATCTCCA
TATAACAGTTCAGCACAATGGGTT Coding sequence (CDS) from alignment at sc0001942:32129..33402 >TCONS_00038831 ID=TCONS_00038831|Name=TCONS_00038831|organism=Clytia hemisphaerica|type=CDS|length=546bp|location=Sequence derived from alignment at sc0001942:32129..33402 (Clytia hemisphaerica)
ttatttgaaattttcaggtgtACTGCAAGCACGATGAATTCGATATACCA
TCCCGGTGACATTGGACTTCTTGTACTTGATCGGTGCCAGTGCATGGAAG
TTCATTGTTAAACCAGTATCAGTATTTTTCGTGTACCATGTCGATGTTAA
TTCATTTCCAGAATGTATTATCCTCGTGTCTAAAAATGGAATACTACCTT
TATCCTCGCGTTCGCAAGTAAATtttagatttggatggaattcatttatt
tcatttagtttgttttcgatctggtttgttttgatattacGTAATATATC
ATCCATATACCTTCCAAAGATTTGCGCTTCTCCTTTGATTTTTCCATCAA
ATTGACTGAGCCAACCATTTGCCAAATAAGGAGCTGGGGGACTACCCATC
GCTAGCCCGTCAGTTTGTCGGTAGTATCCTCGAGGTGTTAGCATTAAGAC
ATTTAGACTGCATAGTTTGGTTAATTCAACAAAAGTATCTTTTGAAACTG
GAGGATGTGGGTATCTATCTCCATATAACAGTTCAGCACAATGGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038831-exon-sc0001942-1491911889:32129..33402 | TCONS_00038831-exon-sc0001942-1491911889:32129..33402 | Clytia hemisphaerica | exon |
| TCONS_00038831-exon-sc0001942-1510915933:32129..33402 | TCONS_00038831-exon-sc0001942-1510915933:32129..33402 | Clytia hemisphaerica | exon |
| TCONS_00038831-exon-sc0001942-1575043694:32129..33402 | TCONS_00038831-exon-sc0001942-1575043694:32129..33402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001942 | supercontig | sc0001942:32129..33402 . |
Blast
The following BLAST results are available for this feature:
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