TCONS_00038829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038829
Unique NameTCONS_00038829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038829 ID=TCONS_00038829|Name=TCONS_00038829|organism=Clytia hemisphaerica|type=transcript|length=328bp
GATGTCTTTAAACTCGTTCTTaataaaaaccagtaaattCTTTCTCAGAC
TCTTGCCTGTTCCTACCTTGGTATATAGCACTTTGTCACCACAAATTACT
GATGTTGTTGAGACTCTTgcctgttcttaatttttccttAAAACAAGTGT
GGTAAATCAATGCCATAAGAGTGGTCAATTAGCCGGTTCTTAATTTTTCC
ATATCTTTTTTTCGTTCTTGATTTCCTTCAACTTACATCAATCTTTCTCA
GCATTggtaaaaagcagaaaaatgtTGAGCACAAGTTGATGTGCCGTGAT
GTTAGGTTGATGGATCCTCAACAGTGAG
Run BLAST on NCBI

transcript from alignment at sc0001942:8510..8837

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038829 ID=TCONS_00038829|Name=TCONS_00038829|organism=Clytia hemisphaerica|type=transcript|length=328bp|location=Sequence derived from alignment at sc0001942:8510..8837 (Clytia hemisphaerica)
CTCACTGTTGAGGATCCATCAACCTAACATCACGGCACATCAACTTGTGC
TCAacatttttctgctttttaccAATGCTGAGAAAGATTGATGTAAGTTG
AAGGAAATCAAGAACGAAAAAAAGATATGGAAAAATTAAGAACCGGCTAA
TTGACCACTCTTATGGCATTGATTTACCACACTTGTTTTaaggaaaaatt
aagaacaggcAAGAGTCTCAACAACATCAGTAATTTGTGGTGACAAAGTG
CTATATACCAAGGTAGGAACAGGCAAGAGTCTGAGAAAGaatttactggt
ttttattAAGAACGAGTTTAAAGACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023310XLOC_023310Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038829-exon-sc0001942-1491911889:8510..8837TCONS_00038829-exon-sc0001942-1491911889:8510..8837Clytia hemisphaericaexon
TCONS_00038829-exon-sc0001942-1510915933:8510..8837TCONS_00038829-exon-sc0001942-1510915933:8510..8837Clytia hemisphaericaexon
TCONS_00038829-exon-sc0001942-1575043694:8510..8837TCONS_00038829-exon-sc0001942-1575043694:8510..8837Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001942supercontigsc0001942:8510..8837 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.29812	0.290714	0.675094	0	0	0.317691	0	0.358822	1.2561	0.622353	1.51018	0.794185	0.594811	0	0	0.181666	1.56658	0.688156	0	0.331622	0.576479	0	0	0	0.960235	1.42831	0.817563	1.30879	0.66178	0.674249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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