TCONS_00038828 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038828
Unique NameTCONS_00038828
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length768

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038828 ID=TCONS_00038828|Name=TCONS_00038828|organism=Clytia hemisphaerica|type=transcript|length=768bp
TTATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTttggtt
ttcgagaaaaatatatttacgTAATTAAAGTGCAGAAAAGAATGGATTCG
GATCTATTAAAGCGTGGGtacaaaatcatcaaatttctGGGTAAAGGAGG
TTTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAAgTGG
CCATTAAAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAG
TGTGAATGTTTTTCCGCCGTCCAAGGATCAAAACACATTGTAAAGTTTAT
AGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTATTTGATCATGGAGCTCT
GTTCAGCTGGTGATCTACGGGCTCCATTAAATAACGGTCGTCTATATAAT
GAGGATCAAACCAAGATGGCATTACGTGATATTTGTATCGGGTTACGGTA
CTGCTTTAAGAAAGGCATAGTTCACCGtgACCTGAAACCCGACAATATCT
TACGGGGTGATGACGGTAATGTCAAGATTACAGATTTTGGGCTAGCATAC
AAAATAAAACACGGTGAAATGATTTCTGACTTCTGGGGAACACCCGTGTA
TAACGCACCAGAGGTTGAACGGGGCGATCCGAAGTTGTACTACCCGCCAA
CAGAGCTCTACGATCCTACCAAAAGCGACACATGGAGTTTGGGTGTAATT
ATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAAT
TGTAAAGTGTGATCGACC
Run BLAST on NCBI

protein sequence of TCONS_00038828-protein

>TCONS_00038828-protein ID=TCONS_00038828-protein|Name=TCONS_00038828-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
YRLYLELQSCKEEFFGFREKYIYVIKVQKRMDSDLLKRGYKIIKFLGKGG
FGKVFRGFHTETRREVAIKVIGADHVNDDLCNECECFSAVQGSKHIVKFI
DVFVGASGSAYLIMELCSAGDLRAPLNNGRLYNEDQTKMALRDICIGLRY
CFKKGIVHRDLKPDNILRGDDGNVKITDFGLAYKIKHGEMISDFWGTPVY
NAPEVERGDPKLYYPPTELYDPTKSDTWSLGVIMYELLTGDLPFESSKEI
VKCDR
Run BLAST on NCBI

transcript from alignment at sc0001942:26043..29608-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038828 ID=TCONS_00038828|Name=TCONS_00038828|organism=Clytia hemisphaerica|type=transcript|length=3566bp|location=Sequence derived from alignment at sc0001942:26043..29608- (Clytia hemisphaerica)
TTATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTT
TTCGAGAAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCG
GATCTATTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGG
TTTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAAGTAA
GTTAGCTTTATTGAGTAATCACAGATGATATAGATATATAGATATATTAG
ATATATAGATGATATACTGTAGAATCCTTTATATAATGAATATTTTTCAA
GTGCCGGAGTGAGTTTTAGGTTGCCATTAACGCTATTAGCATAGATCAAG
TTGAAAATATAGAAAAGTAGTCTTTGAGCTCTTAATCCTTGGGAACGTTA
TTTAGAGATCTGTGGTGCGAAGGTAAAGCATTCGGCTACTGTGCTCAAAG
TTGTGTGTTCGATCCCTGTTCGGGTCATATCAAAGACTTCGTACTTAGTA
ATTTGATACAAAATACAAAATGATACTTGACACCTCCCTCCTGAAATCTC
AACGAATAAGAGAAGAATCCAGGGTAAAACATCTACCTTCAGGTTAATGC
TATTGAAAGGGGAGCCTTTAGAACGCCTCCGACTTCGGTCGCAAGAAGAC
TTAGAGATACATCAGGACTGAAATTTTTTACATTTTTATCTTTTAGGTGG
CCATTAAAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAG
TGTGAATGTTTTTCCGCCGTCCAAGGATCAAAACACATTGTACGTATTAT
TTGAATCTTTCGATGAACGTTTTCACGCCCGGACTTTCTTTCCCCCGACT
GTGCCAAACCTTTTCCTCTGAAAGGTTGCCTTGAGAGGTAGGGGAAAGCC
TGTTGGAGAAATAAGCCGTCGGGAAACGTCCATTGGAGGATTATTGGTCG
AGAAATATCCGTCGGGGAACTATCCTGCTAGCATCGTAACTTCTTCCCTT
TCTTCATTCTAATTGATGATATTTTCAGTCCTTTGTCTAGATATAAATAG
CCTTTTATTGTACACTACGTTAGGACCTCCGACCCTAGGACCTTGAAAAT
AAATTGCCACCAGCCCCAGGCCTGAGTTTGGTATCGGATCCCCCTTGATC
GGCTGTACCATTCTAAATTTTTATTCGGATTTGGGATGAACAATAAATGA
GCTTTTAAGCACAGTGAAATAAAACAAAAATTGCTCTAAAGTCTGCAAGT
TCTGGTGAACTTTGCAGATTTTAGGCTATTATCATCACGCCTGATCAATC
CATTTTAGAGCAGAGCGGCGTGTCGGGCGCTTAGATGATTTGTTAGTGTA
AGGAAATTACAAAAATCATGCCTTTTACATATTTTGTTTCTTTCCATTAT
TTCAGGTAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTAT
TTGATCATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCCATTAAATAA
CGGTCGTCTATATAATGAGGATCAAACCAAGATGGCATTACGTGATATTT
GTATCGGGTTACGGTACTGCTTTAAGAAAGGCATAGTTCACCGGTATGCT
TTATTTTTCATATTCTGAAACGTAGATCTATATACTTTCTTTCAGTTAAA
AGATGATCAAACACACTTTACATGTTTTTTATAAGAACATAAGGCTTTGA
TGGCTAAAATATTAAGAACAAGTTAAGAAATTAATATGAAGGTTTCACGG
ACTCTAAAACACTCTCAAAATGAAAAAATTACTATTTTAAAAAACTATTT
TAGGCTTTAAACTTAAAAAGATAAAAATATTATTTTTGATGCACTTATAC
AAAAGCTTTTTTTTATAAGAATGTTTTTCTTCCAATTCATCATGAATATT
CTTAACTTTTTGGGAAAAATTATTCTGAATAACTGGCAATTTAATAGCAA
AATGCTCCAAAAATAATGGCATTTTTAGGTTCATTTGCCAGTATTCTTAT
TCTTAATTATTTGGCCAATTTCATCATAAATATTCTTATAAAGTAAAAAA
AACGCGTAGTCTTTCTATATCAAGCTGACAGACTGGCGAGATGATGATGA
TAATTTCAGATAAGATGGAGTTTTTATAAGATACTATAATAATTGGTCAT
TTGATGTAATAAAAATGACGCGGTCTTTAGAAAAAGTAAGAAAATTGTTT
TATTACTGGTTAACAACCAACCAAATCAAATAAGAGCTTGTAAAAACTCC
ATCTCGTCCCGATAATTTGCCATTTCTCGAAAAACTAATTGTAATTAATA
AATCTCTATTTTAATTTTAATTTGATTATTCAATGTATTAAATTTTTTTA
GTGACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAATGTCAAG
ATTACAGGTAAACAATTTTTATTAACAACATTATTAGAATACACGGGTTG
CAAAATTATAGCAGTACAGTCAAAACATGTGATTACTTGAAAAAATTTAC
GAGTGCTTTTTTCGGGAGTAATTTTTCCTGTGGCACTGAGACATATTCAA
TTTTTCTGTTTCAGATTTTGGGCTAGCATACAAAATAAAACACGGTGAAA
TGATTTCTGACTTCTGGGGAACACCCGTGTATAACGCACCAGAGGTTGAA
CGGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCTCTACGATCCTAC
CAAAAGCGACACATGGAGTTTGTAAGTTTTTTCTTGAATTTTTTTCTCTT
AAAAATCTCAAATCCTGGTTTATCCACTGACAATAAATTTAGGAATAGTC
TTTATCGGAAAAATATGAACAAAGCCACTTACTGTAGGCAAAAAAAAAAA
GACTGTTTCAGTAATTCCGCTAACGCGATCATTTTTACTTACAGATTCTC
GCAATAATTCAGCATGGCCACATTTCCAGATTTTCATACTCACTAATAAC
CTCTTAGTTTACAAACGTGCGGTGTTCTCGTTTCCACCACTAAATTCCGG
GGTTAGAAAACGCCGATAATTAAAGAATAGTTCAATTCATTACACAATTT
TAGAGCATGTGCGGTGTTTACAGAATGGAGCATCTTTTAAATGAAAGTTT
AAGTAGTCAAATGTAAACATTGTACCTGCCACGTCTTTAACGATACGATT
ACAAACACGTGCCAAAACTAACTTATGAAAAATTGAAATGACATTTTACT
AAAAGGTTTAATGTTCTTTTTAAACCGTATTTTTTATAAGTTTCTCATTT
CCGCACCAAGATTTTTGTCATTTTTCAGGAATTTTTCTCTATTTCTCCCG
GGATAACCAGCATGAGATTGCAAACGGTTTGTTTTTAAAGGTACGGAATA
TATCGTCTTTGAAGCTCATTTTTCAAATACCCGAAGTCCTGTCTTTTTTT
CCGCTAGAAAAGTTGCAAAGGAATCTTAATGCAGAAATGGGAAACTTATA
CAAAACGACGGAACAAGTCCATTTCACTGTTTTTTTAGGGGTGTAATTAT
GTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAATTG
TAAAGTGTGATCGACC

Coding sequence (CDS) from alignment at sc0001942:26043..29608-

>TCONS_00038828 ID=TCONS_00038828|Name=TCONS_00038828|organism=Clytia hemisphaerica|type=CDS|length=4590bp|location=Sequence derived from alignment at sc0001942:26043..29608- (Clytia hemisphaerica)
GGGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCT
CCAAGGAAATTGTAAAGTGTGATCGAATTTTGGGCTAGCATACAAAATAA
AACACGGTGAAATGATTTCTGACTTCTGGGGAACACCCGTGTATAACGCA
CCAGAGGTTGAACGGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCT
CTACGATCCTACCAAAAGCGACACATGGAGTTTTGACCTGAAACCCGACA
ATATCTTACGGGGTGATGACGGTAATGTCAAGATTACAGGTAAAGTTTAT
AGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTATTTGATCATGGAGCTCT
GTTCAGCTGGTGATCTACGGGCTCCATTAAATAACGGTCGTCTATATAAT
GAGGATCAAACCAAGATGGCATTACGTGATATTTGTATCGGGTTACGGTA
CTGCTTTAAGAAAGGCATAGTTCACCGGTGGCCATTAAAGTCATTGGCGC
AGATCACGTAAACGATGACTTGTGTAATGAGTGTGAATGTTTTTCCGCCG
TCCAAGGATCAAAACACATTTATCGTCTTTATCTCGAGTTGCAAAGCTGC
AAGGAAGAATTTTTTGGTTTTCGAGAAAAATATATTTACGTAATTAAAGT
GCAGAAAAGAATGGATTCGGATCTATTAAAGCGTGGGTACAAAATCATCA
AATTTCTGGGTAAAGGAGGTTTCGGTAAGGTTTTCCGAGGCTTTCATACC
GAAACTCGCCGTGAAGGGTGTAATTATGTATGAACTCCTAACAGGGGATC
TACCCTTCGAAAGCTCCAAGGAAATTGTAAAGTGTGATCGAATTTTGGGC
TAGCATACAAAATAAAACACGGTGAAATGATTTCTGACTTCTGGGGAACA
CCCGTGTATAACGCACCAGAGGTTGAACGGGGCGATCCGAAGTTGTACTA
CCCGCCAACAGAGCTCTACGATCCTACCAAAAGCGACACATGGAGTTTTG
ACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAATGTCAAGATT
ACAGGTAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTATT
TGATCATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCCATTAAATAAC
GGTCGTCTATATAATGAGGATCAAACCAAGATGGCATTACGTGATATTTG
TATCGGGTTACGGTACTGCTTTAAGAAAGGCATAGTTCACCGGTGGCCAT
TAAAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAGTGTG
AATGTTTTTCCGCCGTCCAAGGATCAAAACACATTTATCGTCTTTATCTC
GAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTTTCGAGAAAAATATAT
TTACGTAATTAAAGTGCAGAAAAGAATGGATTCGGATCTATTAAAGCGTG
GGTACAAAATCATCAAATTTCTGGGTAAAGGAGGTTTCGGTAAGGTTTTC
CGAGGCTTTCATACCGAAACTCGCCGTGAAGGGTGTAATTATGTATGAAC
TCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAATTGTAAAGTGT
GATCGAATTTTGGGCTAGCATACAAAATAAAACACGGTGAAATGATTTCT
GACTTCTGGGGAACACCCGTGTATAACGCACCAGAGGTTGAACGGGGCGA
TCCGAAGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACCAAAAGCG
ACACATGGAGTTTTGACCTGAAACCCGACAATATCTTACGGGGTGATGAC
GGTAATGTCAAGATTACAGGTAAAGTTTATAGATGTGTTTGTTGGTGCAA
GTGGTAGTGCCTATTTGATCATGGAGCTCTGTTCAGCTGGTGATCTACGG
GCTCCATTAAATAACGGTCGTCTATATAATGAGGATCAAACCAAGATGGC
ATTACGTGATATTTGTATCGGGTTACGGTACTGCTTTAAGAAAGGCATAG
TTCACCGGTGGCCATTAAAGTCATTGGCGCAGATCACGTAAACGATGACT
TGTGTAATGAGTGTGAATGTTTTTCCGCCGTCCAAGGATCAAAACACATT
TATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTT
TCGAGAAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCGG
ATCTATTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGGT
TTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAAGGGTG
TAATTATGTATGAACTCCTAACAGGGGATCTACCCTTCGAAAGCTCCAAG
GAAATTGTAAAGTGTGATCGAATTTTGGGCTAGCATACAAAATAAAACAC
GGTGAAATGATTTCTGACTTCTGGGGAACACCCGTGTATAACGCACCAGA
GGTTGAACGGGGCGATCCGAAGTTGTACTACCCGCCAACAGAGCTCTACG
ATCCTACCAAAAGCGACACATGGAGTTTTGACCTGAAACCCGACAATATC
TTACGGGGTGATGACGGTAATGTCAAGATTACAGGTAAAGTTTATAGATG
TGTTTGTTGGTGCAAGTGGTAGTGCCTATTTGATCATGGAGCTCTGTTCA
GCTGGTGATCTACGGGCTCCATTAAATAACGGTCGTCTATATAATGAGGA
TCAAACCAAGATGGCATTACGTGATATTTGTATCGGGTTACGGTACTGCT
TTAAGAAAGGCATAGTTCACCGGTGGCCATTAAAGTCATTGGCGCAGATC
ACGTAAACGATGACTTGTGTAATGAGTGTGAATGTTTTTCCGCCGTCCAA
GGATCAAAACACATTTATCGTCTTTATCTCGAGTTGCAAAGCTGCAAGGA
AGAATTTTTTGGTTTTCGAGAAAAATATATTTACGTAATTAAAGTGCAGA
AAAGAATGGATTCGGATCTATTAAAGCGTGGGTACAAAATCATCAAATTT
CTGGGTAAAGGAGGTTTCGGTAAGGTTTTCCGAGGCTTTCATACCGAAAC
TCGCCGTGAAGGGTGTAATTATGTATGAACTCCTAACAGGGGATCTACCC
TTCGAAAGCTCCAAGGAAATTGTAAAGTGTGATCGAATTTTGGGCTAGCA
TACAAAATAAAACACGGTGAAATGATTTCTGACTTCTGGGGAACACCCGT
GTATAACGCACCAGAGGTTGAACGGGGCGATCCGAAGTTGTACTACCCGC
CAACAGAGCTCTACGATCCTACCAAAAGCGACACATGGAGTTTTGACCTG
AAACCCGACAATATCTTACGGGGTGATGACGGTAATGTCAAGATTACAGG
TAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGTAGTGCCTATTTGATC
ATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCCATTAAATAACGGTCG
TCTATATAATGAGGATCAAACCAAGATGGCATTACGTGATATTTGTATCG
GGTTACGGTACTGCTTTAAGAAAGGCATAGTTCACCGGTGGCCATTAAAG
TCATTGGCGCAGATCACGTAAACGATGACTTGTGTAATGAGTGTGAATGT
TTTTCCGCCGTCCAAGGATCAAAACACATTTATCGTCTTTATCTCGAGTT
GCAAAGCTGCAAGGAAGAATTTTTTGGTTTTCGAGAAAAATATATTTACG
TAATTAAAGTGCAGAAAAGAATGGATTCGGATCTATTAAAGCGTGGGTAC
AAAATCATCAAATTTCTGGGTAAAGGAGGTTTCGGTAAGGTTTTCCGAGG
CTTTCATACCGAAACTCGCCGTGAAGGGTGTAATTATGTATGAACTCCTA
ACAGGGGATCTACCCTTCGAAAGCTCCAAGGAAATTGTAAAGTGTGATCG
AATTTTGGGCTAGCATACAAAATAAAACACGGTGAAATGATTTCTGACTT
CTGGGGAACACCCGTGTATAACGCACCAGAGGTTGAACGGGGCGATCCGA
AGTTGTACTACCCGCCAACAGAGCTCTACGATCCTACCAAAAGCGACACA
TGGAGTTTTGACCTGAAACCCGACAATATCTTACGGGGTGATGACGGTAA
TGTCAAGATTACAGGTAAAGTTTATAGATGTGTTTGTTGGTGCAAGTGGT
AGTGCCTATTTGATCATGGAGCTCTGTTCAGCTGGTGATCTACGGGCTCC
ATTAAATAACGGTCGTCTATATAATGAGGATCAAACCAAGATGGCATTAC
GTGATATTTGTATCGGGTTACGGTACTGCTTTAAGAAAGGCATAGTTCAC
CGGTGGCCATTAAAGTCATTGGCGCAGATCACGTAAACGATGACTTGTGT
AATGAGTGTGAATGTTTTTCCGCCGTCCAAGGATCAAAACACATTTATCG
TCTTTATCTCGAGTTGCAAAGCTGCAAGGAAGAATTTTTTGGTTTTCGAG
AAAAATATATTTACGTAATTAAAGTGCAGAAAAGAATGGATTCGGATCTA
TTAAAGCGTGGGTACAAAATCATCAAATTTCTGGGTAAAGGAGGTTTCGG
TAAGGTTTTCCGAGGCTTTCATACCGAAACTCGCCGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023309XLOC_023309Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038828-proteinTCONS_00038828-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038828-exon-sc0001942-1575043694:29413..29608TCONS_00038828-exon-sc0001942-1575043694:29413..29608Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1575043694:28820..28912TCONS_00038828-exon-sc0001942-1575043694:28820..28912Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1575043694:28016..28203TCONS_00038828-exon-sc0001942-1575043694:28016..28203Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1575043694:27202..27257TCONS_00038828-exon-sc0001942-1575043694:27202..27257Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1575043694:26888..27044TCONS_00038828-exon-sc0001942-1575043694:26888..27044Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1575043694:26043..26120TCONS_00038828-exon-sc0001942-1575043694:26043..26120Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:29413..29608TCONS_00038828-exon-sc0001942-1510915933:29413..29608Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:28820..28912TCONS_00038828-exon-sc0001942-1510915933:28820..28912Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:28016..28203TCONS_00038828-exon-sc0001942-1510915933:28016..28203Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:27202..27257TCONS_00038828-exon-sc0001942-1510915933:27202..27257Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:26888..27044TCONS_00038828-exon-sc0001942-1510915933:26888..27044Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1510915933:26043..26120TCONS_00038828-exon-sc0001942-1510915933:26043..26120Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:29413..29608TCONS_00038828-exon-sc0001942-1491911889:29413..29608Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:28820..28912TCONS_00038828-exon-sc0001942-1491911889:28820..28912Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:28016..28203TCONS_00038828-exon-sc0001942-1491911889:28016..28203Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:27202..27257TCONS_00038828-exon-sc0001942-1491911889:27202..27257Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:26888..27044TCONS_00038828-exon-sc0001942-1491911889:26888..27044Clytia hemisphaericaexon
TCONS_00038828-exon-sc0001942-1491911889:26043..26120TCONS_00038828-exon-sc0001942-1491911889:26043..26120Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001942supercontigsc0001942:26043..29608 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0634664	0.12378	0.14372	0.0703038	0.42794	0.143001	1.22394	1.37501	0.26741	1.15171	0.20012	0.591756	1.01303	0.314401	1.18927	0.865081	0.45887	0.863036	0.607196	0.141197	0.0733766	0.473841	0.39795	0.396948	1.16302	1.23305	0.870251	0.823321	0.0704428	0.14354
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00038828 vs. Swiss-Prot (Human)
Match: MARK2 (Serine/threonine-protein kinase MARK2 OS=Homo sapiens GN=MARK2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 9.581e-28
Identity = 70/192 (36.46%), Postives = 103/192 (53.65%), Query Frame = 2 
Query:  176 HTETRREVAIKVIGADHVNDD----LCNECECFSAVQGSKHIVKFIDVFVGASGSAYLIMELCSAGDLRAPL-NNGRLYNEDQTKMALRDICIGLRYCFKKGIVHRDLKPDNILRGDDGNVKITDFGLAYKIKHGEMISDFWGTPVYNAPEVERGDPKLYYPPTELYDPTKSDTWSLGVIMYELLTGDLPFE 736
            H  T +EVA+K+I    +N      L  E      V    +IVK  +V +    + YL+ME  S G++   L  +GR+  E + +   R I   ++YC +K IVHRDLK +N+L   D N+KI DFG + +   G  +  F G+P Y APE+ +G         + YD  + D WSLGVI+Y L++G LPF+
Sbjct:   72 HILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMK-VLNHPNIVKLFEV-IETEKTLYLVMEYASGGEVFDYLVAHGRM-KEKEARAKFRQIVSAVQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQG---------KKYDGPEVDVWSLGVILYTLVSGSLPFD 251
The following BLAST results are available for this feature:
BLAST of TCONS_00038828 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MARK29.581e-2836.46Serine/threonine-protein kinase MARK2 OS=Homo sapi... [more]
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