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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038821 ID=TCONS_00038821|Name=TCONS_00038821|organism=Clytia hemisphaerica|type=transcript|length=991bp
ATTGGTTCAAGCAATTTAGGTGATCCGATTGTAGATTCTACTACTCCAAT
AGAAGCTGCTGGTAATTTAGTTTATagtaattttcaagatgttatAGTTT
TAGAGGAGATTATGAGACAAAAGCCTGATCAGATGGCTTTGTTAAAAAGA
CTTGATAATTTACGGACTGGAAATGTTACAAGGAAAGACTGGGAGGAAAT
CAATGCTCGAAGCCATAATTCATTGTGCgaagaagagaagagaaatTTTG
ACAGTGAAGTATCGAACGTTATTTGTCTCACTGAAACATGGAAAGAAGCA
AGGATGTATAATAAAAATGCGTTGAATAGCAAGTATGTGAATGGGAATCG
TGCTGTGTCTGCCGAAATAATTTCCACTGGTGTAGGAAAACATCATTCCA
AAGAAAAAGAATCTATGGGTCAAATCCCAAATGTGAGCATTGTTGCTGCT
GGCTGTCGGGTCATTCTTACTAAGAATCAAGGTAGTCTTACTAGGCTTGG
TTTAAATAATGGAGCACTGGGTACTGTGGTTAGCATCGTGTACAAAGAGG
GTGTAAAACCCCATGTCTTCCCAGAAGTTATAATTGTTGATTTCCCTAAA
TACAAAGATCCACAGTGGCACCCGGACCATCCCACCTGGGTGCCGATACC
CttgaataaagttttttgcGATGCAAAATGCTGTCATCGTGAAGGATTGC
CTTTGATTACTGGTTATGCATTAACAATAACAAAAAGCCAAGGTATGACA
ATAGGAAGAAACCAACAGATCTCTAATGTAATTATAAAACTGTCACCAGA
AATAGGGATGGAAGCAAAAAACTATGGAACTGCATATACCGCATTCTCGC
GTGTAACCGAAGATGCCGATTGGTGTATCGCTGAACCCATACCATTTGAA
CGTCTAGAGTATCTCAACAGACATCCTAAGAGGAAAGTTAGACAAGCTGA
AGAGAAATGCCTTAAATCACTTTCTGAAAAAACGACTCGTG Run BLAST on NCBI protein sequence of TCONS_00038821-protein >TCONS_00038821-protein ID=TCONS_00038821-protein|Name=TCONS_00038821-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
IGSSNLGDPIVDSTTPIEAAGNLVYSNFQDVIVLEEIMRQKPDQMALLKR
LDNLRTGNVTRKDWEEINARSHNSLCEEEKRNFDSEVSNVICLTETWKEA
RMYNKNALNSKYVNGNRAVSAEIISTGVGKHHSKEKESMGQIPNVSIVAA
GCRVILTKNQGSLTRLGLNNGALGTVVSIVYKEGVKPHVFPEVIIVDFPK
YKDPQWHPDHPTWVPIPLNKVFCDAKCCHREGLPLITGYALTITKSQGMT
IGRNQQISNVIIKLSPEIGMEAKNYGTAYTAFSRVTEDADWCIAEPIPFE
RLEYLNRHPKRKVRQAEEKCLKSLSEKTTR Run BLAST on NCBI transcript from alignment at sc0001939:20026..21016 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038821 ID=TCONS_00038821|Name=TCONS_00038821|organism=Clytia hemisphaerica|type=transcript|length=991bp|location=Sequence derived from alignment at sc0001939:20026..21016 (Clytia hemisphaerica)
CACGAGTCGTTTTTTCAGAAAGTGATTTAAGGCATTTCTCTTCAGCTTGT
CTAACTTTCCTCTTAGGATGTCTGTTGAGATACTCTAGACGTTCAAATGG
TATGGGTTCAGCGATACACCAATCGGCATCTTCGGTTACACGCGAGAATG
CGGTATATGCAGTTCCATAGTTTTTTGCTTCCATCCCTATTTCTGGTGAC
AGTTTTATAATTACATTAGAGATCTGTTGGTTTCTTCCTATTGTCATACC
TTGGCTTTTTGTTATTGTTAATGCATAACCAGTAATCAAAGGCAATCCTT
CACGATGACAGCATTTTGCATCgcaaaaaactttattcaaGGGTATCGGC
ACCCAGGTGGGATGGTCCGGGTGCCACTGTGGATCTTTGTATTTAGGGAA
ATCAACAATTATAACTTCTGGGAAGACATGGGGTTTTACACCCTCTTTGT
ACACGATGCTAACCACAGTACCCAGTGCTCCATTATTTAAACCAAGCCTA
GTAAGACTACCTTGATTCTTAGTAAGAATGACCCGACAGCCAGCAGCAAC
AATGCTCACATTTGGGATTTGACCCATAGATTCTTTTTCTTTGGAATGAT
GTTTTCCTACACCAGTGGAAATTATTTCGGCAGACACAGCACGATTCCCA
TTCACATACTTGCTATTCAACGCATTTTTATTATACATCCTTGCTTCTTT
CCATGTTTCAGTGAGACAAATAACGTTCGATACTTCACTGTCAAAatttc
tcttctcttcttcGCACAATGAATTATGGCTTCGAGCATTGATTTCCTCC
CAGTCTTTCCTTGTAACATTTCCAGTCCGTAAATTATCAAGTCTTTTTAA
CAAAGCCATCTGATCAGGCTTTTGTCTCATAATCTCCTCTAAAACTataa
catcttgaaaattactATAAACTAAATTACCAGCAGCTTCTATTGGAGTA
GTAGAATCTACAATCGGATCACCTAAATTGCTTGAACCAAT Coding sequence (CDS) from alignment at sc0001939:20026..21016 >TCONS_00038821 ID=TCONS_00038821|Name=TCONS_00038821|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0001939:20026..21016 (Clytia hemisphaerica)
ACGAGTCGTTTTTTCAGAAAGTGATTTAAGGCATTTCTCTTCAGCTTGTC
TAACTTTCCTCTTAGGATGTCTGTTGAGATACTCTAGACGTTCAAATGGT
ATGGGTTCAGCGATACACCAATCGGCATCTTCGGTTACACGCGAGAATGC
GGTATATGCAGTTCCATAGTTTTTTGCTTCCATCCCTATTTCTGGTGACA
GTTTTATAATTACATTAGAGATCTGTTGGTTTCTTCCTATTGTCATACCT
TGGCTTTTTGTTATTGTTAATGCATAACCAGTAATCAAAGGCAATCCTTC
ACGATGACAGCATTTTGCATCgcaaaaaactttattcaaGGGTATCGGCA
CCCAGGTGGGATGGTCCGGGTGCCACTGTGGATCTTTGTATTTAGGGAAA
TCAACAATTATAACTTCTGGGAAGACATGGGGTTTTACACCCTCTTTGTA
CACGATGCTAACCACAGTACCCAGTGCTCCATTATTTAAACCAAGCCTAG
TAAGACTACCTTGATTCTTAGTAAGAATGACCCGACAGCCAGCAGCAACA
ATGCTCACATTTGGGATTTGACCCATAGATTCTTTTTCTTTGGAATGATG
TTTTCCTACACCAGTGGAAATTATTTCGGCAGACACAGCACGATTCCCAT
TCACATACTTGCTATTCAACGCATTTTTATTATACATCCTTGCTTCTTTC
CATGTTTCAGTGAGACAAATAACGTTCGATACTTCACTGTCAAAatttct
cttctcttcttcGCACAATGAATTATGGCTTCGAGCATTGATTTCCTCCC
AGTCTTTCCTTGTAACATTTCCAGTCCGTAAATTATCAAGTCTTTTTAAC
AAAGCCATCTGATCAGGCTTTTGTCTCATAATCTCCTCTAAAACTataac
atcttgaaaattactATAAACTAAATTACCAGCAGCTTCTATTGGAGTAG
TAGAATCTACAATCGGATCACCTAAATTGCTTGAACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038821-exon-sc0001939-1491911889:20026..21016 | TCONS_00038821-exon-sc0001939-1491911889:20026..21016 | Clytia hemisphaerica | exon |
| TCONS_00038821-exon-sc0001939-1510915933:20026..21016 | TCONS_00038821-exon-sc0001939-1510915933:20026..21016 | Clytia hemisphaerica | exon |
| TCONS_00038821-exon-sc0001939-1575043694:20026..21016 | TCONS_00038821-exon-sc0001939-1575043694:20026..21016 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001939 | supercontig | sc0001939:20026..21016 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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