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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038816 ID=TCONS_00038816|Name=TCONS_00038816|organism=Clytia hemisphaerica|type=transcript|length=971bp
NTATGATTAACTTTGAATTGTCTTCTTATTTTCTAGAAGTGGCAGATACC
GAGAAGAATGTTGCAAAACAccttgaaaaacttgaaaaaggcTTAAGTTT
TTTTGAAGAACACCTTGGACTGAAGGTGTTGTCAAATCCTGATGATCATC
TGACATTCAAATTTACAAAGATCGACGAAATGAATCAAGATAAAGAATTT
TCCTTTAATTTGGCTGTCGAAGGCTCCCCTGGAAAGTACACAGTTTCTGA
CTATTCTGTCCCGATTCCTGACCTCGAAGTCAGCCTTCAAGAATTGAACG
AGGGAGACGACTTAAAGAAGTTCATTTGCTTCATGAGAAACTCCTTCAAA
AAATCCACCAAATGATGGACTCATTTTGAGCGATGCGGGGCAATTTTCCT
ATTGGAGCTTTTGATTCAAATTCAACGAGGATGAAGCGATGATGTGACAG
TGTCGAACGGTTTTTTTTCGAATATGAAACTATTGAAGCTTGCCAGAAAT
TAATGTTTGAAAatgtgttttgatttgtttatcGAAGAAGTGTTTAGAAA
GAGGACTACAGAGAACagttaacaagaaaagaaaaaaaacattttatcat
TGACAGATAAAATTTGATTCAATATTTATTCTTTGGTTATGGATAAAAAA
GAATTGCCCTTTTTACAGTTTTGTTTTGGTAATCCTATTATCAAGATTAC
AACGTGGCTTTTTGGCTCCTATCTTTTGCGCAAACACCACTTGCTTTGCT
CTAAAGGtgctttttcagataatttgTGAAAGTaaatcctcgcgaaagtt
tcccGATTCTTTTTGCGTGGAGTTTTATGGCCCTTTTATCTTCAAAATTA
ATTCGATTAATCCTTATAAAGTTACTATTTTATTAAAGAGttataaaatc
tttttaaaattctcCATTGTTATATTTAATAATATTTCacttgtttcaaa
aaaaatgtcaagcATTCTGTA Run BLAST on NCBI protein sequence of TCONS_00038816-protein >TCONS_00038816-protein ID=TCONS_00038816-protein|Name=TCONS_00038816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MINFELSSYFLEVADTEKNVAKHLEKLEKGLSFFEEHLGLKVLSNPDDHL
TFKFTKIDEMNQDKEFSFNLAVEGSPGKYTVSDYSVPIPDLEVSLQELNE
GDDLKKFICFMRNSFKKSTK Run BLAST on NCBI transcript from alignment at sc0001936:26118..27820+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038816 ID=TCONS_00038816|Name=TCONS_00038816|organism=Clytia hemisphaerica|type=transcript|length=1703bp|location=Sequence derived from alignment at sc0001936:26118..27820+ (Clytia hemisphaerica)
NTATGATTAACTTTGAATTGTCTTCTTATTTTCTAGAAGTGGCAGATACC
GAGAAGAATGTTGCAAAACAccttgaaaaacttgaaaaaggcTTAAGTTT
TTTTGAAGAACACCTTGGACTGAAGGTGTTGTCAAATCCTGGTAAgggtt
tgattgattgattgattgacacTTTCTACAAggaattttattggtttgag
CTGATTTGAGGCCATTTTGCAAAAGCAGGTGTGCTGAGTCATGGTGGTAT
GGTTTAACTCAATCAAAATGAACCTTGGTCTTTCTTAAATTGACTTGGTG
ATATAATAGTACCCTCTTTAAGAAATTAGGAAGAAAATTGCCGAGAGCGT
TGGAGTACCTGAGAATACCATCAAGCCCTTTACCCGATGcctaaaagaca
ctaaaataataaaaagtgcGTACAACTATTGGAGTTCCAGTTCATTCCAT
TTCTTCTTTTAGATGATCATCTGACATTCAAATTTACAAAGATCGACGAA
ATGAATCAAGATAAAGAATTTTCCTTTAATTTGGCTGTCGAAGGCTCCCC
TGGAAAGTACACAGGTTTGCTTGTAATTCTTTTCATTATATacagttttc
ttataagaattatGTCTCAAGATTTTGTTCAatcttttcttcgtttttat
tttttagtctTTTCGTGTGTTTTTTCGTAGCTAGAGACTTTTTCAAGGGT
AAATATATTTCAACCCAaccaacaattttcaaaattctttcctAAGAATA
TTTTGAGGCTCAAAATGGAAAAACCTCTTATAATATGAAAACCCTGAGCC
TAGATCAATATTTTTCATTACCTATAGCAATCAGGACTTCAAAATGGTct
ctttcgattgttttaagAGGTATTCTGCCAGTCAGCTCGCTTATCTATGA
ACTTTTGACTGGATTTGACTGGATTTTTGGATTTGACTGTGAATTTATTG
ATCTACAACTTTTTTCTTCTTACAGTTTCTGACTATTCTGTCCCGATTCC
TGACCTCGAAGTCAGCCTTCAAGAATTGAACGAGGGAGACGACTTAAAGA
AGTTCATTTGCTTCATGAGAAACTCCTTCAAAAAATCCACCAAATGATGG
ACTCATTTTGAGCGATGCGGGGCAATTTTCCTATTGGAGCTTTTGATTCA
AATTCAACGAGGATGAAGCGATGATGTGACAGTGTCGAACGGTTTTTTTT
CGAATATGAAACTATTGAAGCTTGCCAGAAATTAATGTTTGAAAatgtgt
tttgatttgtttatcGAAGAAGTGTTTAGAAAGAGGACTACAGAGAACag
ttaacaagaaaagaaaaaaaacattttatcatTGACAGATAAAATTTGAT
TCAATATTTATTCTTTGGTTATGGATAAAAAAGAATTGCCCTTTTTACAG
TTTTGTTTTGGTAATCCTATTATCAAGATTACAACGTGGCTTTTTGGCTC
CTATCTTTTGCGCAAACACCACTTGCTTTGCTCTAAAGGtgctttttcag
ataatttgTGAAAGTaaatcctcgcgaaagtttcccGATTCTTTTTGCGT
GGAGTTTTATGGCCCTTTTATCTTCAAAATTAATTCGATTAATCCTTATA
AAGTTACTATTTTATTAAAGAGttataaaatctttttaaaattctcCATT
GTTATATTTAATAATATTTCacttgtttcaaaaaaaatgtcaagcATTCT
GTA Coding sequence (CDS) from alignment at sc0001936:26118..27820+ >TCONS_00038816 ID=TCONS_00038816|Name=TCONS_00038816|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at sc0001936:26118..27820+ (Clytia hemisphaerica)
ATGATTAACTTTGAATTGTCTTCTTATTTTCTAGAAGTGGCAGATACCGA
GAAGAATGTTGCAAAACAccttgaaaaacttgaaaaaggcTTAAGTTTTT
TTGAAGAACACCTTGGACTGAAGGTGTTGTCAAATCCTGATGATCATCTG
ACATTCAAATTTACAAAGATCGACGAAATGAATCAAGATAAAGAATTTTC
CTTTAATTTGGCTGTCGAAGGCTCCCCTGGAAAGTACACAGTTTCTGACT
ATTCTGTCCCGATTCCTGACCTCGAAGTCAGCCTTCAAGAATTGAACGAG
GGAGACGACTTAAAGAAGTTCATTTGCTTCATGAGAAACTCCTTCAAAAA
ATCCACCAAATGAATGATTAACTTTGAATTGTCTTCTTATTTTCTAGAAG
TGGCAGATACCGAGAAGAATGTTGCAAAACAccttgaaaaacttgaaaaa
ggcTTAAGTTTTTTTGAAGAACACCTTGGACTGAAGGTGTTGTCAAATCC
TGATGATCATCTGACATTCAAATTTACAAAGATCGACGAAATGAATCAAG
ATAAAGAATTTTCCTTTAATTTGGCTGTCGAAGGCTCCCCTGGAAAGTAC
ACAGTTTCTGACTATTCTGTCCCGATTCCTGACCTCGAAGTCAGCCTTCA
AGAATTGAACGAGGGAGACGACTTAAAGAAGTTCATTTGCTTCATGAGAA
ACTCCTTCAAAAAATCCACCAAATGAATGATTAACTTTGAATTGTCTTCT
TATTTTCTAGAAGTGGCAGATACCGAGAAGAATGTTGCAAAACAccttga
aaaacttgaaaaaggcTTAAGTTTTTTTGAAGAACACCTTGGACTGAAGG
TGTTGTCAAATCCTGATGATCATCTGACATTCAAATTTACAAAGATCGAC
GAAATGAATCAAGATAAAGAATTTTCCTTTAATTTGGCTGTCGAAGGCTC
CCCTGGAAAGTACACAGTTTCTGACTATTCTGTCCCGATTCCTGACCTCG
AAGTCAGCCTTCAAGAATTGAACGAGGGAGACGACTTAAAGAAGTTCATT
TGCTTCATGAGAAACTCCTTCAAAAAATCCACCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038816-exon-sc0001936-1491911889:26118..26258 | TCONS_00038816-exon-sc0001936-1491911889:26118..26258 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1510915933:26118..26258 | TCONS_00038816-exon-sc0001936-1510915933:26118..26258 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1575043694:26118..26258 | TCONS_00038816-exon-sc0001936-1575043694:26118..26258 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1491911889:26580..26681 | TCONS_00038816-exon-sc0001936-1491911889:26580..26681 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1510915933:26580..26681 | TCONS_00038816-exon-sc0001936-1510915933:26580..26681 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1575043694:26580..26681 | TCONS_00038816-exon-sc0001936-1575043694:26580..26681 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1491911889:27093..27820 | TCONS_00038816-exon-sc0001936-1491911889:27093..27820 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1510915933:27093..27820 | TCONS_00038816-exon-sc0001936-1510915933:27093..27820 | Clytia hemisphaerica | exon |
| TCONS_00038816-exon-sc0001936-1575043694:27093..27820 | TCONS_00038816-exon-sc0001936-1575043694:27093..27820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001936 | supercontig | sc0001936:26118..27820 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013255 | Spc25 |
Blast
The following BLAST results are available for this feature:
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