TCONS_00038811 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038811
Unique NameTCONS_00038811
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length322

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038811 ID=TCONS_00038811|Name=TCONS_00038811|organism=Clytia hemisphaerica|type=transcript|length=322bp
NNGTTCTTCACGAAAAGTGTTTCTTGAAGAATTAGGTGGTCTGTACAAGA
TTAAAAGGCTAATAGGTTGACTACTAAACGTCTCTTTTTTGAACTTTATC
AATGTGTAACCTGCTGCTTTATTACACTCTAACATTTGAATTGAAGAATT
TGTGCAACATGCAGTGTTTTGAAAACGATTAATTGAATTGTTGTTATACT
CAATATTATAACTATTTAATGTTTGATCAATTCCACTAGTATCACTTGTA
GGTGATAGCTGAGTTTCAGTAAGGCATAACAAGTCACTGttcattaaatt
ttcagatttttttaggTCAANN
Run BLAST on NCBI

protein sequence of TCONS_00038811-protein

>TCONS_00038811-protein ID=TCONS_00038811-protein|Name=TCONS_00038811-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
XDLKKSENLMNSDLLCLTETQLSPTSDTSGIDQTLNSYNIEYNNNSINRF
QNTACCTNSSIQMLECNKAAGYTLIKFKKETFSSQPISLLILYRPPNSSR
NTFREEX
Run BLAST on NCBI

transcript from alignment at sc0001935:14655..14976

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038811 ID=TCONS_00038811|Name=TCONS_00038811|organism=Clytia hemisphaerica|type=transcript|length=322bp|location=Sequence derived from alignment at sc0001935:14655..14976 (Clytia hemisphaerica)
NNTTGAcctaaaaaaatctgaaaatttaatgaaCAGTGACTTGTTATGCC
TTACTGAAACTCAGCTATCACCTACAAGTGATACTAGTGGAATTGATCAA
ACATTAAATAGTTATAATATTGAGTATAACAACAATTCAATTAATCGTTT
TCAAAACACTGCATGTTGCACAAATTCTTCAATTCAAATGTTAGAGTGTA
ATAAAGCAGCAGGTTACACATTGATAAAGTTCAAAAAAGAGACGTTTAGT
AGTCAACCTATTAGCCTTTTAATCTTGTACAGACCACCTAATTCTTCAAG
AAACACTTTTCGTGAAGAACNN

Coding sequence (CDS) from alignment at sc0001935:14655..14976

>TCONS_00038811 ID=TCONS_00038811|Name=TCONS_00038811|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0001935:14655..14976 (Clytia hemisphaerica)
NTTGAcctaaaaaaatctgaaaatttaatgaaCAGTGACTTGTTATGCCT
TACTGAAACTCAGCTATCACCTACAAGTGATACTAGTGGAATTGATCAAA
CATTAAATAGTTATAATATTGAGTATAACAACAATTCAATTAATCGTTTT
CAAAACACTGCATGTTGCACAAATTCTTCAATTCAAATGTTAGAGTGTAA
TAAAGCAGCAGGTTACACATTGATAAAGTTCAAAAAAGAGACGTTTAGTA
GTCAACCTATTAGCCTTTTAATCTTGTACAGACCACCTAATTCTTCAAGA
AACACTTTTCGTGAAGAACNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023295XLOC_023295Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038811-exon-sc0001935-1491911889:14655..14976TCONS_00038811-exon-sc0001935-1491911889:14655..14976Clytia hemisphaericaexon
TCONS_00038811-exon-sc0001935-1510915933:14655..14976TCONS_00038811-exon-sc0001935-1510915933:14655..14976Clytia hemisphaericaexon
TCONS_00038811-exon-sc0001935-1575043694:14655..14976TCONS_00038811-exon-sc0001935-1575043694:14655..14976Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038811-proteinTCONS_00038811-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001935supercontigsc0001935:14655..14976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.81651	7.57863	5.4578	3.91014	3.38685	2.34179	3.22888	1.51142	1.58727	2.62146	2.22639	3.34524	1.46151	3.25241	2.3174	0.573906	1.50055	0.724657	2.33602	1.04763	6.28798	7.10642	2.51965	3.92695	0	0.300814	9.65725	7.35045	5.82276	3.55006
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038811 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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