TCONS_00038789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038789
Unique NameTCONS_00038789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length484

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038789 ID=TCONS_00038789|Name=TCONS_00038789|organism=Clytia hemisphaerica|type=transcript|length=484bp
ATTTAGTCGAAAATGAAAAAGTATAGCAATGGATAATTGTATAAAATGTG
GTAAAAAGTGCGAAATTAAAAATCTTCGACAGTTATGCTCAAAATGTCAC
CATCTCAGGACACCAAACGTCAAGCTAAAAAAAAGAGCCAAACTTCAAGA
AGTTTCGGACAACAGCAAAGACTCCGATTATTCTCCTTCGTCTCCTTCTT
CTGGAAGTGCAACCGTATCAGAAGAAAAACGTCATCGTGATACCGATGCA
GACTCTCTTTCTTCCTCTACTGACAATGAAGACGGAAAAGTCAACGAAAC
GCGAAAGAAAAAGCAGTTTCACAAGACAAAAGcaATCAAATCATCAGAAC
AACGTTATCATGATACAGATCAAGACTCTCTTTCTTCCTCTAATGACAGT
GAACACGGAGAAGAAAAGAAAGTGACAAAGCAGTCATCCAAGACAAAAGC
AAACGAACACAGAAATCCAAGAAAGATGTccata
Run BLAST on NCBI

transcript from alignment at sc0001929:11506..18054+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038789 ID=TCONS_00038789|Name=TCONS_00038789|organism=Clytia hemisphaerica|type=transcript|length=6549bp|location=Sequence derived from alignment at sc0001929:11506..18054+ (Clytia hemisphaerica)
ATTTAGTCGAAAATGAAAAAGTATAGCAATGGATAATTGTATAAAATGTG
GTAAAAAGTGCGAAATTAAAAATCTTCGACAGTTATGCTCAAAATGTCAC
CATCTCAGGACACCAAACGTCAAGCTAAAAAAAAGAGCCAAACTTCAAGG
TAACTTTTACATATCCTTATAAAAGGGAGAAAATTCTTCATTGTGCAATA
TGTTAGACACGATTAAATTCTCGGATGTGACGTAACCAACGGGGAAAGTT
ATAAAGACACTGAAAAGGAGACTTTATATGTTTAAAACAGGCATTTTACT
GTCCAACACATGTTTTGTGTTTCTTTCCGATAGAAGATTTGGACAGGTAT
CTTATGATACTTAATTTAATCTTTCAATCCTTATTTTTCAGAAGTTTCGG
ACAACAGCAAAGACTCCGATTATTCTCCTTCGTCTCCTTCTTCTGGAAGT
GGTAAATGATTAGATTTTGTCATTCTAAAATTttatattggaacattttt
catTGAGATATGCCAACTGAAAGGTATATTTCCATATCATGACTcagttt
tataaaattttatactTGCCATGATCTCTGATTTTTGGAATTGTGAACTT
TTTCTTTGGGCCTTCAAAATTTTAATCAGAATTCGAAAAAGACAACTGAA
AACTTGAATGTAAGTTTTTTTCATCAATTAACTTCTATTTTAGCAACCGT
ATCAGAAGAAAAACGTCATCGTGATACCGATGCAGACTCTCTTTCTTCCT
CTACTGACAATGGTGAGTAGACGACGAGCCGACGAGCCACTTTTTAAGGA
ATGTTTGTTTAGGGGATAGTACTTTCCGAAAGAGGGGAAGAGATCGTAAT
TTCCAGGACTGTTATTATAGagacaaaatttgcaaagaattGCATTACTG
TTACTCTAACTTAAAACACTTGATTTGGTGTATTGATATTTCTCTGAAAG
TGGATAAGCACCTAAATTTCAACAGTCTTCATATTTTTAACGAAAAAGCT
TCCGTGTGGGCTTTTGTTTCCGTCTATAATTAAATTTGTCATTTGTTCTT
TTAGAAGACGGAAAAGTCAACGAAACGCGAAAGAAAAAGCAGTTTCACAA
GACAAAAGGTATTCTTTTGTATTAACCTTATCAGCACTTTGGGGTTTAAA
TGACCCCTGTGCTGTTGGTAGCTCTATATCTCTGAgaagatttttgaaac
aatCTGAAACTTTGTGACTTATCCAATCGATTTCAAATTTGTATACATAA
TATATTGACAATCCAATTAAGAAAATTTGTACAAATCTAAGTATGATGAC
ATCATCTGATATTACGTCatcaattttggaaaatttcactAGTAAGCAGC
ATTATTTAATTAGTTATGTCAAAGACTAGTGAAAACTGTATAATGACGTC
ATTagtttttcgatgacgtcaacGCGTCCCCCCAAATTTCGTTTTATGAT
AGAGAAAATCTGTACCAATTTTCACGAACATAGCACAGCTTGATATCAGA
AATTATAAGGCGTGGTTTTTTACACCCTTTTGAGAATAAAGAAGCCAAAA
AGGCTTGGTATTAATACGGCTAATAAACTGATTAAAAATTATGGAGAACT
TTGTGCAAAACCTTATTTAGTCACGTTGACTTAACCAGCCCAAAATGTTT
ATGAATGAAGGAGGGAAGGGTGGAGAATAGTCCCTGTTTTTGTTCTGGAT
GGCGTTTTTAGCTTTCAGGGTGATGTCAATTCTCCTGATGAGCATGTTAA
TGtaataattttgtatttttagcaATCAAATCATCAGAACAACGTTATCA
TGATACAGATCAAGACTCTCTTTCTTCCTCTAATGACAGTGGTGAGTAGT
GGTAGAGTAAAGTGTTGAGCCATTTTCTAAGGAATATCTATTTTTCCTTA
AACTTAATACACTTAATTTGGAATATCGATATCTCTCTAAATGTCAAAGA
ATCATTCGTCAGTctttatatttttaaacttttccatGTGTAATTTTGTT
TTCGTCAATTATTAAATTTGTGATTTGTCCATTTAGAACACGGAGAAGAA
AAGAAAGTGACAAAGCAGTCATCCAAGACAAAAGGTTACATATTTTATAA
AGctttataaaaaaagatgaaaatgtttCTCCATATTGGAGGGTAGAATG
CATTTCTTCATGATTGATGTGTTAGATCGAAACAAAACTTACAACGTATT
ATAATCGTTCGAATCATTAGGTAACCTTTTAACGcagttttcaaaaatag
tttttgttGTGACATAAGTCATGTCAGGTAAATGGGGTTGAAAGAATCTT
TACTTTTACAATTTGCATAGTTGCTTATTGCTTCCTCTATACCAATTTTA
ACGTTGTTAATTATAGTCCGTTCAGTCTAACTTGGttaatgactttttta
caaacactcaatttctattgtttttgatagttgaaagaaaataattcCAC
TTGAAAGTCATTAGTCATTAACCAAGTTAGAGTGAACGGACTATAATGAA
TTGTTACTTCTTATCAAATTCTATCGATCAAATTCTCTTCATTATCTCTG
CTCAGagtttaatttttatttatttcctcTCGTAGCAAACGAACACGGAA
ATCCAAGAAAGAAGTccataagaaaaagaaaaggtatATCTTACATCGTG
GATTGTAGTTGTGACAGTTTGGTGTCACCAGACTCTTTGTTATGGCCGGT
CAGGCTTGTAATTTTATGTTTATttgatttatcttttttccTGTAGCGTT
TGTTTGTACATCCATATTAAAATGTATTTTGTATGTAAAACGTTTATAAT
TGTCACTTAATTATTATTACTAAATGTCCCATGTGTATTCGTTTATGTCA
ACTGTATTGGGAATTGTAAAGTATTTTATTATTGTACTCTATTAATCATT
GTTATTCCCGTGATAGTTCTCTATCATTCAATGTTATGTTATAAATGTTC
AGTAAAGTAATGTGTTTGTCAGTGCGTTGTTATGTAAGCTGTAGTGAGTT
CATGTGGTGTTTGTGGACAGTATTTTTAGTAAGTTTGATATTTGTTATTA
TTGCATTTCTTGTATTTCTCTTATAAACTTGTCTCCATTCTTGTATCTCT
TTGCAATAGTTTACCTATTTCTTGTACTTTTGAGCTACTGTTTctaaaat
tatttgttttgaaGTATTTCATTTACTTATAAATTTGTACAAATATTCTG
TTTGTATTTTGCTTTGTAGCCGTATTTCCAAAGTTTGAAAGACGCGTTAG
AAACCTGTCAAACCTTGATGTTAGTTCTTTTTAGTTGATCGCCTGGCATT
AACATTCTTTACCTTTACAATTATATATCccgcatttatttttctttggg
cCTTCAAAATTTTAATCGGAATACGAAAAAGACAACTAAAAACTTGAATG
AGCTGGAGTTGATTCAAGACCCTTAGATCTTTGTTATTTGAAGATTAATT
TATTTACATCACTTAAATTTGCATTTTTTAATATGATGCAATATAAAATA
CCAGACAGTTCTTTGGTCCTATGTGGGAACAATAGTTCAGCTGCCTAAAT
GCTGAAATTTAATTTCATACCACTTAAAATTTTTTATTTTTAAGAAATGT
CGAATGACTTAAAGCTGGAAATGAAAAGCTTAGAAACATCATAGAAACAT
ATGCAAAGTTACGGATTaccaaattcttatttcttatcaaatctttatta
tttttgccCTGAGTCTAATTTATGAATTCTTCTTGTAGGAAACGGACACG
GAAGTCGAAAGGAGcctaaaacaaaaagacaagGTATATCCTACGTCAGG
GTTTTTACAGGGAAAAAATGCCATATCTACAGACTTTGGACAAATTGAGA
CTCAACTCACTGTGATTTCAGAGTTCAGGACAAAATCTTAAgcgattttt
gagaattttgccCGAGAAAAGGGCCATTTTACTGAAAATTTTCGCATTTT
GAcatataaaagattttttgggcCACCATCATGTtttggatttgaaaaaa
aacctttcaaacCTAAAAAATAGCTTTTCCTAAATACACAACTGAAgagc
ttcaaatccaaaaatttcaagtgtCTAGCTTGGGATTGGGAAGTTCAGGA
TTTACGGGTCTGCTAAAACAGTACTTTGCTACccagggcccggttgttca
aaagtggattagaTTAATTCCCGATTAGCGCTAATCTCAATTAAACTTGG
ATTAGTTAATCTGCGCGATTAAATTCTGATGTTCGAACGTCAGATTAGCT
AATCCTTGACTTTTGCCTGTGTTTTCAAAGCTTTTAATCTTGACGtaact
tttcgaatgttttgaaaacattcgaaaatctaTTTTCGTTGAAAAGTATC
ACGTCAATGCAGCGACTTCgtcttttttgttgaaaaaggcTTGCTAATCT
GCGCTAATCCTGCCTCGGAGCAGGATTAGAATTTGTCCTATTTAATCGTG
ATTTAATCCAGATTTAATCCTAATCTTTTTCGAACAACCGACGGCCCCGC
GCAAACCCGCGCTAATCAgaatttaatcaaaatttaatcTAATCCGCCGC
TAATCctcttttgaacaaccgggcccagCATCGGATAGTATTGAAACTTT
TTAGGCTAATTTACATGTTAAGATTGACcctcaaaattggataaaaattc
tgaatttttttaaaattgcaAGCATTATTGAAACACTCGGTTAAGTCTCA
ACTTGTCAAAAATCTATCATTATGACATTGCTTTTCCTTCAAAGTACGAG
AGTAAAAGTGGTTTCCAAGGCAAAATTATGACAGTAGGAACTGATAAGTA
TGAAATATTTGCTTATATTGAAGTTTGAAGTGAAAACTTTTGTACTTCTG
CCTAAGGGGTCGCGAGGTCATCAGGCTTGGCATTCATGGCAAATCCATCA
TGATGGAAAACTCACCATGACCCAAATTTTGCTGTCAACTTATTCTAATC
CCTTTAGGTCTATATAATCAGGAACAAAAGTCAAAAGAAATATACGCTGA
TGAGAAAATTGGCCCTAACTCAGTACCCAgtccaaatttattttcatcaa
ttaaCTTATATTTTTAGCGACCGTATCAGCAGAAAAACGTCATTGTGATA
CCGATGCAGACTCTCTTTCTTCCACTACTGACAGTGGTGAGTTGACGACG
AGCCGACAAACCACTTTCTGAGGAATGTTTGTTTACGGGATAGTATTTTC
CGGAAGCGGGGAAGAGATCGTAATTTCCAGGACTGTTATTATAGAgataa
aatttgcaaagaatTGCATTACTGTTACTCTAACTTAAAACACTTGATTT
GGTGTATTGATATTTCTCTGAAAGTGGATAAGCACCTAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTCGTCAATTATTAAATTTGTGATTTGTCCATTTAGAAc
acgaagaagaaaagaaagtgaCAAAGCAGTCATCCAAGAAAAAAGGTTAC
ATATTTTATAAAGGCTgatcaaaaaaagatgaaattgtTTCTACGTATGG
GAGGGTAGAGTGCATTTCTCCATGATTGATGTGTTAGATCGAAACAAAAC
TTATAACGTATTATAATCGTTCGAATCATTAGGTAACCTTTTAACGCAGT
TTTCGAAAATAGTTTTTGTAGTGACATAAGTCATGTCAGGTAAATGGAGG
GATGAAAGAATCTTTACTTTTACAAAATGCATCGTTGCTTATTGCTTCCT
CTATACCAACTTTAAAGTTGTTGATTACtgaattgttattttttatcaaa
ttcaatCGATCAAATTCTCTTTATTATTTCTGCTCAGAGTTTAATTTATG
ATTTCCTCTCGTAGCAAACGAACACAGAAATCCAAGAAAGATGTccata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023281XLOC_023281Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038789-exon-sc0001929-1491911889:11506..11654TCONS_00038789-exon-sc0001929-1491911889:11506..11654Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:11506..11654TCONS_00038789-exon-sc0001929-1510915933:11506..11654Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:11506..11654TCONS_00038789-exon-sc0001929-1575043694:11506..11654Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:11897..11956TCONS_00038789-exon-sc0001929-1491911889:11897..11956Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:11897..11956TCONS_00038789-exon-sc0001929-1510915933:11897..11956Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:11897..11956TCONS_00038789-exon-sc0001929-1575043694:11897..11956Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:12199..12267TCONS_00038789-exon-sc0001929-1491911889:12199..12267Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:12199..12267TCONS_00038789-exon-sc0001929-1510915933:12199..12267Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:12199..12267TCONS_00038789-exon-sc0001929-1575043694:12199..12267Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:12560..12613TCONS_00038789-exon-sc0001929-1491911889:12560..12613Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:12560..12613TCONS_00038789-exon-sc0001929-1510915933:12560..12613Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:12560..12613TCONS_00038789-exon-sc0001929-1575043694:12560..12613Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:13278..13346TCONS_00038789-exon-sc0001929-1491911889:13278..13346Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:13278..13346TCONS_00038789-exon-sc0001929-1510915933:13278..13346Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:13278..13346TCONS_00038789-exon-sc0001929-1575043694:13278..13346Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:13542..13589TCONS_00038789-exon-sc0001929-1491911889:13542..13589Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:13542..13589TCONS_00038789-exon-sc0001929-1510915933:13542..13589Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:13542..13589TCONS_00038789-exon-sc0001929-1575043694:13542..13589Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1491911889:18020..18054TCONS_00038789-exon-sc0001929-1491911889:18020..18054Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1510915933:18020..18054TCONS_00038789-exon-sc0001929-1510915933:18020..18054Clytia hemisphaericaexon
TCONS_00038789-exon-sc0001929-1575043694:18020..18054TCONS_00038789-exon-sc0001929-1575043694:18020..18054Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001929supercontigsc0001929:11506..18054 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.6204	0	0.797414	2.81232	6.09747e-06	1.92639	1.45871	2.76664	0.244049	0.290373	1.6209	0	0	0.655911	0.344507	2.30759	1.3291	1.11801	0	0.00292549	0.833246	1.01079	0	0.363129	0	1.66089	0	0	0.487723	0.316898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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