TCONS_00038778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038778
Unique NameTCONS_00038778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1052

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038778 ID=TCONS_00038778|Name=TCONS_00038778|organism=Clytia hemisphaerica|type=transcript|length=1052bp
NATCACCAAGAACGCCGGTAAGAAACCAATCAAAAGCCGCAAGATCGCGT
CCCTCGCCAAAATTGGTTCCAAAGAGTCCCAGAAAGCCACTAAGTGCTAC
TAAACCAAAACCTTACCGCTATGCTGTGAATAAAGTGTGTAGTGGATGTA
CCGAAAAGATAAAGATTATTAATGACCAAACCAACAGAGTTCAGTCACTG
GAATCCGAAAACAATAGGTTACAAAATATAATTGACCGCGGCTGTTATGT
GGatgATAGCGCTCCAAAATCAGGCAAGTTGGCACCTAAAGTTGCAGAAA
AGTACATGaTGACAAAACTTCATCCAGAATGTCCAAATGTCTACCTTACA
CAGTTCGATTTTTCACTCCTGATGACTAAAACTACTCCATCTAAATCAGC
ACTGTTTTTGATAGATTGCTTTTATGAAAAGGAGGAGCAATTTAACATGA
CTGTGAACGGTTCAGCAAAGGCAAACAAGGCGGCAGTTGATCCGGTCCTA
AAAAAAGCCATATTGCatTATTGTCGTGAAAAATTTAAAGGCACTTCGTA
TGCAGTTTCTGATGCTGCATTAAATGCTGCCCTAAGAAGTAAATTTACTT
CTTTACGAGCAAGAGGTAATGACGAGGAAGGTGACTctgcaaagaaaatg
ttatttCCTAATGGACAATAATAATCACTAAACTATTTAAATAACTTGTC
AACCGAAGATTTTGTTCAACATTTAGATTTAGTTTTTATTGTTCATcaag
tttttatttcaaagtggTTTTTATGTTACATTTGTATCTACTcttaatgt
ttttcatttttccttgtttttctaATTATACTTTGATTTCTGAGAATCCC
GTTGATTTTTAAGAACTCCTAATACTCACCTTTCCATCACTAACACTTGA
TGTggttaaagaaaaagaaagtttcattATAGTATTTATTGTCTTAAATT
TTACTGCTGAGATATTAGccatatatttttctttatactGACCTTGCACC
CGTTTATTAAGGTAGTGAAGGTGTAATTTTCCAGACCTTTATATTATTTC
TT
Run BLAST on NCBI

protein sequence of TCONS_00038778-protein

>TCONS_00038778-protein ID=TCONS_00038778-protein|Name=TCONS_00038778-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
SPRTPVRNQSKAARSRPSPKLVPKSPRKPLSATKPKPYRYAVNKVCSGCT
EKIKIINDQTNRVQSLESENNRLQNIIDRGCYVDDSAPKSGKLAPKVAEK
YMMTKLHPECPNVYLTQFDFSLLMTKTTPSKSALFLIDCFYEKEEQFNMT
VNGSAKANKAAVDPVLKKAILHYCREKFKGTSYAVSDAALNAALRSKFTS
LRARGNDEEGDSAKKMLFPNGQ
Run BLAST on NCBI

transcript from alignment at sc0001925:26062..28009+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038778 ID=TCONS_00038778|Name=TCONS_00038778|organism=Clytia hemisphaerica|type=transcript|length=1948bp|location=Sequence derived from alignment at sc0001925:26062..28009+ (Clytia hemisphaerica)
NATCACCAAGAACGCCGGTAAGAAACCAATCAAAAGCCGCAAGATCGCGT
CCCTCGCCAAAATTGGTTCCAAAGAGTCCCAGAAAGCCACTAAGTGCTAC
TAAACCAAAACCTTACCGCTATGCTGTGAATAAAGTGTGTAGTGGATGTA
CCGAAAAGATAAAGATTATTAATGACCAAACCAACAGAGTTCAGTCACTG
GAATCCGAAAACAATAGGTTACAAAATATAATTGACCGCGGCTGTTATGT
GGGTAAGTGCATTcatctttatttaattttcacagaattttttaaagttg
GTTGAACTTCTAGAAATGCTAACATAACTATGCTAACAGGCTATTTATAG
CGAgctgaaaatatattttaagatTAATAAACAGGGTCAATTATGTCTCT
GGGGTtgggaaaaattggaaaattaacATTAATTTGgcgaacttttttcc
tcagatgATAGCGCTCCAAAATCAGGCAAGTTGGCACCTAAAGTTGCAGA
AAAGTACATGGTGAGTCTCTTGGAAGCTTTATTAATTGAAGAAAATTGAC
TGCTTTTGCCTTTAATGGTTATGATTACATAAAAAATGCCATACTAAAAT
ATAaaagccatttaaaaaaaaatttgagctaATGTAATTTTCAAAGACCT
GCCTATTCAATTCATTATTAATAGTGTTGCACCCTTTTTTAATAATAATG
ACCATTTTTATCTATTCCCagatttttgcttgtttttagaTGACAAAACT
TCATCCAGAATGTCCAAATGTCTACCTTACACAGTTCGATTTTTCACTCC
TGATGACTAAAACTACTCCATCTAAATCAGCACTGTTTTTGATAGATTGC
TTTTATGAAAAGGAGGAGCAATTTAACATGACTGTGAACGGTTCAGCAAA
GGCAAACAAGGCGGCAGTTGATCCGGTCCTAAAAAAAGCCATATTGCGTA
AGATGTATTGTTATGCATATAGTTTTTATCATTGTGTTATATACCTTAAC
tggataaatttttgcgtgtaCTAATTTTTGGGAGAcaagaatttaaagat
ttcgcgtggattaaatttcgNGGAGACAAGAAAATCAAGGGTCTTTATAA
TTTTTgtgtggattaaatttcgcgaaaatggccttTTATATTTAATTTCA
CGACTAAATAAGAGATGTgtgttttttaatcgaacaaagtcaaaagcttt
caaaaaactaCTTTTAGGAGGTTACTAGAGTTTATAATTGAAATGAAGAG
TTCAACTCATAACATGTTTTGATTGTAATATGTTATCTAGATTTCGCGAT
TGTgaaattccaaataatttcgCATCCGGACTAAATTTCGTGTAAATaac
caaaatttgcgaaaaccgtgaaaattaatccacacaaaaatatatatttt
tatttatttcagatTATTGTCGTGAAAAATTTAAAGGCACTTCGTATGCA
GTTTCTGATGCTGCATTAAATGCTGCCCTAAGAAGTAAATTTACTTCTTT
ACGAGCAAGAGGTAATGACGAGGAAGGTGACTctgcaaagaaaatgttat
ttCCTAATGGACAATAATAATCACTAAACTATTTAAATAACTTGTCAACC
GAAGATTTTGTTCAACATTTAGATTTAGTTTTTATTGTTCATcaagtttt
tatttcaaagtggTTTTTATGTTACATTTGTATCTACTcttaatgttttt
catttttccttgtttttctaATTATACTTTGATTTCTGAGAATCCCGTTG
ATTTTTAAGAACTCCTAATACTCACCTTTCCATCACTAACACTTGATGTg
gttaaagaaaaagaaagtttcattATAGTATTTATTGTCTTAAATTTTAC
TGCTGAGATATTAGccatatatttttctttatactGACCTTGCACCCGTT
TATTAAGGTAGTGAAGGTGTAATTTTCCAGACCTTTATATTATTTCTT

Coding sequence (CDS) from alignment at sc0001925:26062..28009+

>TCONS_00038778 ID=TCONS_00038778|Name=TCONS_00038778|organism=Clytia hemisphaerica|type=CDS|length=2676bp|location=Sequence derived from alignment at sc0001925:26062..28009+ (Clytia hemisphaerica)
TCACCAAGAACGCCGGTAAGAAACCAATCAAAAGCCGCAAGATCGCGTCC
CTCGCCAAAATTGGTTCCAAAGAGTCCCAGAAAGCCACTAAGTGCTACTA
AACCAAAACCTTACCGCTATGCTGTGAATAAAGTGTGTAGTGGATGTACC
GAAAAGATAAAGATTATTAATGACCAAACCAACAGAGTTCAGTCACTGGA
ATCCGAAAACAATAGGTTACAAAATATAATTGACCGCGGCTGTTATGTGG
atgATAGCGCTCCAAAATCAGGCAAGTTGGCACCTAAAGTTGCAGAAAAG
TACATGaTGACAAAACTTCATCCAGAATGTCCAAATGTCTACCTTACACA
GTTCGATTTTTCACTCCTGATGACTAAAACTACTCCATCTAAATCAGCAC
TGTTTTTGATAGATTGCTTTTATGAAAAGGAGGAGCAATTTAACATGACT
GTGAACGGTTCAGCAAAGGCAAACAAGGCGGCAGTTGATCCGGTCCTAAA
AAAAGCCATATTGCatTATTGTCGTGAAAAATTTAAAGGCACTTCGTATG
CAGTTTCTGATGCTGCATTAAATGCTGCCCTAAGAAGTAAATTTACTTCT
TTACGAGCAAGAGGTAATGACGAGGAAGGTGACTctgcaaagaaaatgtt
atttCCTAATGGACAATAATCACCAAGAACGCCGGTAAGAAACCAATCAA
AAGCCGCAAGATCGCGTCCCTCGCCAAAATTGGTTCCAAAGAGTCCCAGA
AAGCCACTAAGTGCTACTAAACCAAAACCTTACCGCTATGCTGTGAATAA
AGTGTGTAGTGGATGTACCGAAAAGATAAAGATTATTAATGACCAAACCA
ACAGAGTTCAGTCACTGGAATCCGAAAACAATAGGTTACAAAATATAATT
GACCGCGGCTGTTATGTGGatgATAGCGCTCCAAAATCAGGCAAGTTGGC
ACCTAAAGTTGCAGAAAAGTACATGaTGACAAAACTTCATCCAGAATGTC
CAAATGTCTACCTTACACAGTTCGATTTTTCACTCCTGATGACTAAAACT
ACTCCATCTAAATCAGCACTGTTTTTGATAGATTGCTTTTATGAAAAGGA
GGAGCAATTTAACATGACTGTGAACGGTTCAGCAAAGGCAAACAAGGCGG
CAGTTGATCCGGTCCTAAAAAAAGCCATATTGCatTATTGTCGTGAAAAA
TTTAAAGGCACTTCGTATGCAGTTTCTGATGCTGCATTAAATGCTGCCCT
AAGAAGTAAATTTACTTCTTTACGAGCAAGAGGTAATGACGAGGAAGGTG
ACTctgcaaagaaaatgttatttCCTAATGGACAATAATCACCAAGAACG
CCGGTAAGAAACCAATCAAAAGCCGCAAGATCGCGTCCCTCGCCAAAATT
GGTTCCAAAGAGTCCCAGAAAGCCACTAAGTGCTACTAAACCAAAACCTT
ACCGCTATGCTGTGAATAAAGTGTGTAGTGGATGTACCGAAAAGATAAAG
ATTATTAATGACCAAACCAACAGAGTTCAGTCACTGGAATCCGAAAACAA
TAGGTTACAAAATATAATTGACCGCGGCTGTTATGTGGatgATAGCGCTC
CAAAATCAGGCAAGTTGGCACCTAAAGTTGCAGAAAAGTACATGaTGACA
AAACTTCATCCAGAATGTCCAAATGTCTACCTTACACAGTTCGATTTTTC
ACTCCTGATGACTAAAACTACTCCATCTAAATCAGCACTGTTTTTGATAG
ATTGCTTTTATGAAAAGGAGGAGCAATTTAACATGACTGTGAACGGTTCA
GCAAAGGCAAACAAGGCGGCAGTTGATCCGGTCCTAAAAAAAGCCATATT
GCatTATTGTCGTGAAAAATTTAAAGGCACTTCGTATGCAGTTTCTGATG
CTGCATTAAATGCTGCCCTAAGAAGTAAATTTACTTCTTTACGAGCAAGA
GGTAATGACGAGGAAGGTGACTctgcaaagaaaatgttatttCCTAATGG
ACAATAATCACCAAGAACGCCGGTAAGAAACCAATCAAAAGCCGCAAGAT
CGCGTCCCTCGCCAAAATTGGTTCCAAAGAGTCCCAGAAAGCCACTAAGT
GCTACTAAACCAAAACCTTACCGCTATGCTGTGAATAAAGTGTGTAGTGG
ATGTACCGAAAAGATAAAGATTATTAATGACCAAACCAACAGAGTTCAGT
CACTGGAATCCGAAAACAATAGGTTACAAAATATAATTGACCGCGGCTGT
TATGTGGatgATAGCGCTCCAAAATCAGGCAAGTTGGCACCTAAAGTTGC
AGAAAAGTACATGaTGACAAAACTTCATCCAGAATGTCCAAATGTCTACC
TTACACAGTTCGATTTTTCACTCCTGATGACTAAAACTACTCCATCTAAA
TCAGCACTGTTTTTGATAGATTGCTTTTATGAAAAGGAGGAGCAATTTAA
CATGACTGTGAACGGTTCAGCAAAGGCAAACAAGGCGGCAGTTGATCCGG
TCCTAAAAAAAGCCATATTGCatTATTGTCGTGAAAAATTTAAAGGCACT
TCGTATGCAGTTTCTGATGCTGCATTAAATGCTGCCCTAAGAAGTAAATT
TACTTCTTTACGAGCAAGAGGTAATGACGAGGAAGGTGACTctgcaaaga
aaatgttatttCCTAATGGACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023276XLOC_023276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038778-exon-sc0001925-1491911889:26062..26313TCONS_00038778-exon-sc0001925-1491911889:26062..26313Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1510915933:26062..26313TCONS_00038778-exon-sc0001925-1510915933:26062..26313Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1575043694:26062..26313TCONS_00038778-exon-sc0001925-1575043694:26062..26313Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1491911889:26516..26571TCONS_00038778-exon-sc0001925-1491911889:26516..26571Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1510915933:26516..26571TCONS_00038778-exon-sc0001925-1510915933:26516..26571Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1575043694:26516..26571TCONS_00038778-exon-sc0001925-1575043694:26516..26571Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1491911889:26801..27008TCONS_00038778-exon-sc0001925-1491911889:26801..27008Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1510915933:26801..27008TCONS_00038778-exon-sc0001925-1510915933:26801..27008Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1575043694:26801..27008TCONS_00038778-exon-sc0001925-1575043694:26801..27008Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1491911889:27474..28009TCONS_00038778-exon-sc0001925-1491911889:27474..28009Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1510915933:27474..28009TCONS_00038778-exon-sc0001925-1510915933:27474..28009Clytia hemisphaericaexon
TCONS_00038778-exon-sc0001925-1575043694:27474..28009TCONS_00038778-exon-sc0001925-1575043694:27474..28009Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038778-proteinTCONS_00038778-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001925supercontigsc0001925:26062..28009 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.17838	1.19015	0.52416	0.139857	10.3292	8.25201	3.73339	3.69777	2.69529	4.08533	4.26378	2.8589	2.04323	1.4243	2.29414	3.41085	3.06453	2.39626	2.95267	3.51108	4.88283	4.28701	4.72889	5.48373	0.0451849	0.241959	5.88612	3.14091	2.05529	1.85606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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