TCONS_00038747 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038747
Unique NameTCONS_00038747
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038747 ID=TCONS_00038747|Name=TCONS_00038747|organism=Clytia hemisphaerica|type=transcript|length=829bp
ATATCTGGACAAGCAAGGTCAAAATAATTTGTTTATTATATCATTTCATA
TAAACATGTAAGAACAACTAATAACATTTTGTTCGTAATTTCGATTCACA
AAATTAATCATATTCGATTGACCGaaaatttagtttaaatttaCACATGT
GGTGACTCTAGATAGGTGTGGCTTTTAAAATAAAAGCTAGACCGTTATTT
TGCTCCTCGAATACTAAATATAACTAAAGAAAACACCAAATTAGTGAAAC
TTTCGCAAAGTTGGACCAATTCTTTCGTCCCTTAATAGGAGTACGTTGTA
CTTTAGAATTTGGGACTCAAACTGGACTGTTTTGATTCTtgttataaata
aaaagaaaattcaatattAATTAAGCTAGTATTAATATACATTGATATTA
CTTTAATAATAGCATGGGTGGTTTCAACTTGGTGTAAAGTTTTCTTTACT
GACTCAGCCGAAACTTGACTGCTATTTTGGTATGTATAGTTCGGAATTCT
TTTTTGTGAGCTGTTTAcctgaaaaatattattgaatatTGAGTTAATTC
AATAGAAATAGCAATTTTGGGATACCAGTCCTTGAAACTAATTCAAACAC
CGTTATTGTAATTTACAAtgtaatacaccgtttaggagtctcgcttcctc
caccgtgttccaccgtgaaaacggtaggtaaaaatgcgcactgtactact
gtggaaggttagaagaatgtaaacattgtcaaattttttctttcctttat
aaAGAATGACTTATATacttgaacatgatatcaatgataattttatgcca
ggtctctcctgaaaatttcacaaaaattc
Run BLAST on NCBI

transcript from alignment at sc0001919:17301..18129

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038747 ID=TCONS_00038747|Name=TCONS_00038747|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at sc0001919:17301..18129 (Clytia hemisphaerica)
gaatttttgtgaaattttcaggagagacctggcataaaattatcattgat
atcatgttcaagtATATAAGTCATTCTttataaaggaaagaaaaaatttg
acaatgtttacattcttctaaccttccacagtagtacagtgcgcattttt
acctaccgttttcacggtggaacacggtggaggaagcgagactcctaaac
ggtgtattacaTTGTAAATTACAATAACGGTGTTTGAATTAGTTTCAAGG
ACTGGTATCCCAAAATTGCTATTTCTATTGAATTAACTCAatattcaata
atatttttcaggTAAACAGCTCACAAAAAAGAATTCCGAACTATACATAC
CAAAATAGCAGTCAAGTTTCGGCTGAGTCAGTAAAGAAAACTTTACACCA
AGTTGAAACCACCCATGCTATTATTAAAGTAATATCAATGTATATTAATA
CTAGCTTAATTaatattgaattttctttttatttataacaAGAATCAAAA
CAGTCCAGTTTGAGTCCCAAATTCTAAAGTACAACGTACTCCTATTAAGG
GACGAAAGAATTGGTCCAACTTTGCGAAAGTTTCACTAATTTGGTGTTTT
CTTTAGTTATATTTAGTATTCGAGGAGCAAAATAACGGTCTAGCTTTTAT
TTTAAAAGCCACACCTATCTAGAGTCACCACATGTGtaaatttaaactaa
attttCGGTCAATCGAATATGATTAATTTTGTGAATCGAAATTACGAACA
AAATGTTATTAGTTGTTCTTACATGTTTATATGAAATGATATAATAAACA
AATTATTTTGACCTTGCTTGTCCAGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023257XLOC_023257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038747-exon-sc0001919-1491911889:17301..18129TCONS_00038747-exon-sc0001919-1491911889:17301..18129Clytia hemisphaericaexon
TCONS_00038747-exon-sc0001919-1510915933:17301..18129TCONS_00038747-exon-sc0001919-1510915933:17301..18129Clytia hemisphaericaexon
TCONS_00038747-exon-sc0001919-1575043694:17301..18129TCONS_00038747-exon-sc0001919-1575043694:17301..18129Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001919supercontigsc0001919:17301..18129 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0558006	0.0647899	0.126774	0.154335	0.121957	0	0	0	0.179185	0	0.0381852	0.803631	0.540764	0.0649853	0.139667	0.172166	0.0882496	5.33695	4.59114	0.290814	0.0858258	0.945373	1.77114	2.58035	1.94087	0	0.167476	0.0635121	0.129418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038747 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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