TCONS_00038743 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038743
Unique NameTCONS_00038743
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length521

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038743 ID=TCONS_00038743|Name=TCONS_00038743|organism=Clytia hemisphaerica|type=transcript|length=521bp
CTTTCCGAAAGTTCCTATTTTACAAGATGTACAACCAAATTGATCATATG
GTATTCTTCCCAAGGGACATTTTTTGCATGAAGATGTCCCTATTTCGTCT
TGGTATTCCATGGCACCGTTACATTTATGACATTTTCCATCTTCCTTTCC
AAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAACCACCTTGGT
AATATGGTATTTTGCCTAGggtggagtttttacaagaaattGCACCCTCT
TCATCTTGATATTCCATAGGATCGTGACACTTATGACATTTTCCATCATT
TTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATGTGTAGACCAT
AAAAACTATATGGTCTTGTCCCTGAAGGACAATTTTTGCACGAGGTTTCT
CCTGCATCATCTTGGTATTCCATGGGACCGTCACACATGATACACTTTCC
ATCTTTTTCAATTGTTCCTGTTCTACATTGAGAGCAATCAACATTGTAGC
CATCACTTTCGAGGGGTACTG
Run BLAST on NCBI

transcript from alignment at sc0001919:23153..23931+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038743 ID=TCONS_00038743|Name=TCONS_00038743|organism=Clytia hemisphaerica|type=transcript|length=779bp|location=Sequence derived from alignment at sc0001919:23153..23931+ (Clytia hemisphaerica)
CTTTCCGAAAGTTCCTATTTTACAAGATGTACAACCAAATTGATCATATG
GTATTCTTCCCAAGGGACATTTTTTGCATGAAGATGTCCCTATTTCGTCT
TGGTATTCCATGGCACCGTTACATTTATGACATTTTCCATCTTCCTTTCC
AAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAACCACCTTGGT
AATATGGTATTTTGCCTAGggtggagtttttacaagaaattGCACCCTCT
TCATCTTGATATTCCATAGGATCGTGACACTTATGACATTTTCCATCATT
TTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATGTGTAGACCAT
AAAAACTATATGGTCTTGTCCCTGAAGGACATTTTTTACACGAAGTTGCA
CCTACTTCATTCTGATACTCCATAGCACCATTGCATTTGTGGCATTTCCC
ATCCTCTTTCCCAAAATATCCTTTGTGACAATACTGACAGCCATCATGGA
AGACTGAGGCAACTTGGCCTATTGGACATTTTGTTTTGCTGTGACATTTT
CCAgtactttcattgaaaaatccTTTTCTACATTCCAAGCAGTCAGTAGC
GAAGCCATAAAAATCATTAGGTGCTGTTCCCTTATGACAATTTTTGCACG
AGGTTTCTCCTGCATCATCTTGGTATTCCATGGGACCGTCACACATGATA
CACTTTCCATCTTTTTCAATTGTTCCTGTTCTACATTGAGAGCAATCAAC
ATTGTAGCCATCACTTTCGAGGGGTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023253XLOC_023253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038743-exon-sc0001919-1491911889:23153..23532TCONS_00038743-exon-sc0001919-1491911889:23153..23532Clytia hemisphaericaexon
TCONS_00038743-exon-sc0001919-1510915933:23153..23532TCONS_00038743-exon-sc0001919-1510915933:23153..23532Clytia hemisphaericaexon
TCONS_00038743-exon-sc0001919-1575043694:23153..23532TCONS_00038743-exon-sc0001919-1575043694:23153..23532Clytia hemisphaericaexon
TCONS_00038743-exon-sc0001919-1491911889:23791..23931TCONS_00038743-exon-sc0001919-1491911889:23791..23931Clytia hemisphaericaexon
TCONS_00038743-exon-sc0001919-1510915933:23791..23931TCONS_00038743-exon-sc0001919-1510915933:23791..23931Clytia hemisphaericaexon
TCONS_00038743-exon-sc0001919-1575043694:23791..23931TCONS_00038743-exon-sc0001919-1575043694:23791..23931Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001919supercontigsc0001919:23153..23931 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0406624	0.283773	0	0	2.64543	1.62559	0	0.0305897	0.803652	0.15497	15.419	18.1008	0.959601	0.371349	1.02972	0.69225	1.64094	0.788095	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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