TCONS_00038742 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038742
Unique NameTCONS_00038742
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038742 ID=TCONS_00038742|Name=TCONS_00038742|organism=Clytia hemisphaerica|type=transcript|length=3773bp
AGTTAGGAAACAGTATAccaaatttcgcgattttttacacttttaaattt
tttcgcgtgtatttaattttgcgaaatttttcaaaaaactcgcGAATTTA
AGTACACGCAAAACTTAATACCAGCGAAATTTAATACCTTTGAGGTAATA
TTTTTGAATGGACCGCATTTCTATTAAGTCTAACATTGTTCGTATGGAAT
CTTTACCATCACAAACATTATAAAACAGCAGTCTCTCCTCAAATGAACCT
TTTGCGTTCATATAGATATTCTAAATATTCCTCATTAAATGTTATTATGT
AATCACCttaaatgtatataaaaaagaaagtgatGCTACAACCCTGTGAC
TCTATAGTACACACTAAAATTTATCCAGTTGAGAGTAAATTATACCAAAA
GTATCAAACAACTTAAAAGAAGTATTAAAATTGTACCCAATGGTATATTT
TTATATGAACCTGCTGATGTGGGTGGATCGTCGTAACACACTGCATTTTC
ATCTTTATAACATTTACCATTAGCAGCACCAGAATAACCCCATTTGCAAC
AAACGCATCGTATGTTAACACCATCAATCTCCTGAGGAACTTTACCCACT
TTACATTCCTTACACGATGTTGCTCTCAGTTGGTCCTGGTATTCCATGGC
ACCGACACAATTATAACATCTTCCATCATTTTTGgcatattttccttttc
cacAAGGTTGACATTCGGTTTTGAATCCCTCAGGATCGCTGGAAGATATA
AGTCCTAATGGACATCTCTTGCACGCACTTGCACCTGTTTCGTCTTGGTA
TTCCATGGGATCTTCAcatttatgacattttccgtCATTTTTGCCAAATG
TTCCCTTTTTACATAAAGAGCAACCAGAGTTATGTTCATTAGGAATTTGT
CCCAAAGGACATGTTTTACAGGAAATTTCATCTCTATCATCTTGGTATTC
CATGAGACCGTCACATTTGTAACATTTTCCATCTTTTTCAAATGATCCAA
TTGTACAAGAAGAGCAGTCGGTGTTGGAGTCATTAGGTATTTCCCCTGCA
GGACATTTCTTGCAAAAAGTCGCACCCTGTCCATTTTGATATTCCATGGG
ACCGTCACACTTATGACattttccatcttcttttcCAAAAGTTCCTTCTT
TGCAAGATAAACATACAATATTATTACTACCACGTGTAGACAGTATTGTC
CCTAAAGGACACTTATTACACGAAGATGCTCCTATATCGTTCTGATATTC
CATGGGACTGTCACATTTATAACATTTCCCATCGAATTTTCCAAATGTTC
CTCTGTCGCAAGGAGAGCATGTAGTTTTAAAACCGTTGTTGTCGTACGGT
ATTTTTCCTTGTGCGCAGCTCTTACATGAAGATGCTCCTGTTTCGTCTTG
ATATTCCATTGCGCCTGTACATTTAAGACATTTCCCGTCTCCATTTCCAA
ATGTTCCTCTTTTACACGAATAGCAGTAAATATTGAAACCATTGGAAGTA
TATGGATATTTTCCGGAGTTACATTTTTTACACGAAGATGATCCTGTTTT
GTCTTGGTACTCCATGGGACCATCACACTTATAGCATTTCCCGTCACTTT
TCCCAAAGGTTCCAATCGGGCAAGGTGAGCAACTCGTGTTAAAACCATCA
ATACTAAGTGGTACTTCTCCCAAAGGACATTTTTTGCATGAAGATGTCCC
TATTTCGTCTTGGTATTCCATGGCACCGTTACATTTATGACATTTTCCAT
CTTCCTTTCCAAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAA
CCACCTTGGTAATATGGTATTTTGCCTAGggtggagtttttacaagaaat
tGCACCCTCTTCATCTTGATATTCCATAGGATCGTGACACTTATGACATT
TTCCATCATTTTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATG
TGTAGACCATAAAAACTATATGGTCTTGTCCCTGAAGGACATTTTTTACA
CGAAGTTGCACCTACTTCATTCTGATACTCCATAGCACCATTGCATTTGT
GGCATTTCCCATCCTCTTTCCCAAAATATCCTTTGTGACAATACTGACAG
CCATCATGGAAGACTGAGGCAACTTGGCCTATTGGACATTTTGTTTTGCT
GTGACATTTTCCAgtactttcattgaaaaatccTTTTCTACATTCCAAGC
AGTCAGTAGCGAAGCCATAAAAATCATTAGGTGCTGTTCCCTTATGACAA
TTTTTGCACGAGGTTTCTCCTGCATCATCTTGGTATTCCATGGGACCGTC
ACACATGATACACTTTCCATCTTTTTCAATTGTTCCTGTTCTACATTGAG
AGCAATCAACATTGTAGCCATCACTTTCGAGGGGTACTGTCCCTGAAGGA
CAAGTTTTGCACGAAGTAGTTCCTGTTTCGTCTTGGTATTCCATGGGACC
ATCACATTTATGACATTTCCCTTCCTCTTTTCCAAATGTCCCTTTTCTAC
AATGATAACAATATCTGTTTGACAACACCGAAGGAACTTGACCTAATGGA
CATTTTACTTTGCTCATACACTCGCCATTATTTACATTCAAACAAGAGTA
ACAATATGTTTTGGTGTCTAAGTACCCTTTAGGAGCGTATGAGGATTTAC
ACTTTTTGCACGTACTTGATTGGACTTCGTCTTGGTATTCCATCGGACCG
TCACATCGGTGGCATCTTCCATCGTCTTTTCCAAATGTTCCTTTTCCACA
AGAAGAGCATCCAATGTAGCCCCTATAATAATATGGTATTTTCCCCAAAG
GACATTTCTTGCACGAGACTTTACCTGTCTGGTCTTGATACTCCATGGCA
CCGTCACATGGGTGACATTTGCCATCATCCTTTCCAAAATATCCTTTTGC
ACAAGAAGAGCATCTAATGTAGTAGCCATTGTAATAAGATGGTGTTGATC
CTAATGAACATTTCTTGCATGAAAATTTTCCTTCCTTGTCTTGATACTCT
CTGACACCATCACATGGATAACATTTTCCATCATCTTTACCAAATGTCCC
TTTACGACACTGTGCGCAACTAGTGTTGTAACCATAATTGGTGTATGGTA
TGGATCCCAAAGGACATTTCTTGCATGAAGATTTTCCTTCTTCGTTTTGG
TATTCCATTACACCAttacaatgtttacattttcctTCTATTTCATATGT
CCCTGCACGGCACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTTTTG
ATACGGATCCCAAAGGACATTTCTTGCATGAAGTTTTTCCTTTCTCGTCT
TGGTATTCCCTGACACCATTACAATGTTCACATTTTCCTTCTATTTCATA
TGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTT
TTGATACGGATCCCAAAGAACATTTCTTGCATGAAGTTTTTCCTTTCTCG
TCTTGGTATTCCATGACACCATTACAATGTTCACATTTTCCTTCTATTTC
ATATGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAAT
CGGTTTTTGATACGGATCCCAAAGAACATTTCTTGCATGAAGATGCCCCT
ATTTCATCTTGGTATTCCCTGACACCGTCACAACGTTCACATCTTCCTTC
TATTTCATATGTTCCTTTACTACATCCCCCTTCTATTGCCGTAGACAAGG
TGAAAAACAGCAATGATGCCAATATCATACTATTGACACTCATCATTAAA
CATCAAGTTGCTTTGTGTTCCAT
Run BLAST on NCBI

transcript from alignment at sc0001919:21399..25471+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038742 ID=TCONS_00038742|Name=TCONS_00038742|organism=Clytia hemisphaerica|type=transcript|length=4073bp|location=Sequence derived from alignment at sc0001919:21399..25471+ (Clytia hemisphaerica)
AGTTAGGAAACAGTATAccaaatttcgcgattttttacacttttaaattt
tttcgcgtgtatttaattttgcgaaatttttcaaaaaactcgcGAATTTA
AGTACACGCAAAACTTAATACCAGCGAAATTTAATACCTTTGAGGTAATA
TTTTTGAATGGACCGCATTTCTATTAAGTCTAACATTGTTCGTATGGAAT
CTTTACCATCACAAACATTATAAAACAGCAGTCTCTCCTCAAATGAACCT
TTTGCGTTCATATAGATATTCTAAATATTCCTCATTAAATGTTATTATGT
AATCACCttaaatgtatataaaaaagaaagtgatGCTACAACCCTGTGAC
TCTATAGTACACACTAAAATTTATCCAGTTGAGAGTAAATTATACCAAAA
GTATCAAACAACTTAAAAGAAGTATTAAAATTGTACCCAATGGTATATTT
TTATATGAACCTGCTGATGTGGGTGGATCGTCGTAACACACTGCATTTTC
ATCTTTATAACATTTACCATTAGCAGCACCAGAATAACCCCATTTGCAAC
AAACGCATCGTATGTTAACACCATCAATCTCCTGAGGAACTTTACCCACT
TTACATTCCTTACACGATGTTGCTCTCAGTTGGTCCTGGTATTCCATGGC
ACCGACACAATTATAACATCTTCCATCATTTTTGgcatattttccttttc
cacAAGGTTGACATTCGGTTTTGAATCCCTCAGGATCGCTGGAAGATATA
AGTCCTAATGGACATCTCTTGCACGCACTTGCACCTGTTTCGTCTTGGTA
TTCCATGGGATCTTCAcatttatgacattttccgtCATTTTTGCCAAATG
TTCCCTTTTTACATAAAGAGCAACCAGAGTTATGTTCATTAGGAATTTGT
CCCAAAGGACATGTTTTACAGGAAATTTCATCTCTATCATCTTGGTATTC
CATGAGACCGTCACATTTGTAACATTTTCCATCTTTTTCAAATGATCCAA
TTGTACAAGAAGAGCAGTCGGTGTTGGAGTCATTAGGTATTTCCCCTGCA
GGACATTTCTTGCAAAAAGTCGCACCCTGTCCATTTTGATATTCCATGGG
ACCGTCACACTTATGACattttccatcttcttttcCAAAAGTTCCTTCTT
TGCAAGATAAACATACAATATTATTACTACCACGTGTAGACAGTATTGTC
CCTAAAGGACACTTATTACACGAAGATGCTCCTATATCGTTCTGATATTC
CATGGGACTGTCACATTTATAACATTTCCCATCGAATTTTCCAAATGTTC
CTCTGTCGCAAGGAGAGCATGTAGTTTTAAAACCGTTGTTGTCGTACGGT
ATTTTTCCTTGTGCGCAGCTCTTACATGAAGATGCTCCTGTTTCGTCTTG
ATATTCCATTGCGCCTGTACATTTAAGACATTTCCCGTCTCCATTTCCAA
ATGTTCCTCTTTTACACGAATAGCAGTAAATATTGAAACCATTGGAAGTA
TATGGATATTTTCCGGAGTTACATTTTTTACACGAAGATGATCCTGTTTT
GTCTTGGTACTCCATGGGACCATCACACTTATAGCATTTCCCGTCACTTT
TCCCAAAGGTTCCAATCGGGCAAGGTGAGCAACTCGTGTTAAAACCATCA
ATACTAAGTGGTACTTCTCCCAAAGGACATTTTTTGCATGAAGCAGCACC
AACCTCATTCTGATATTCCATAACACCATCACAATCATGACATTTGCCAT
CATTCTTTCCGAAAGTTCCTATTTTACAAGATGTACAACCAAATTGATCA
TATGGTATTCTTCCCAAGGGACATTTTTTGCATGAAGATGTCCCTATTTC
GTCTTGGTATTCCATGGCACCGTTACATTTATGACATTTTCCATCTTCCT
TTCCAAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAACCACCT
TGGTAATATGGTATTTTGCCTAGggtggagtttttacaagaaattGCACC
CTCTTCATCTTGATATTCCATAGGATCGTGACACTTATGACATTTTCCAT
CATTTTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATGTGTAGA
CCATAAAAACTATATGGTCTTGTCCCTGAAGGACATTTTTTACACGAAGT
TGCACCTACTTCATTCTGATACTCCATAGCACCATTGCATTTGTGGCATT
TCCCATCCTCTTTCCCAAAATATCCTTTGTGACAATACTGACAGCCATCA
TGGAAGACTGAGGCAACTTGGCCTATTGGACATTTTGTTTTGCTGTGACA
TTTTCCAgtactttcattgaaaaatccTTTTCTACATTCCAAGCAGTCAG
TAGCGAAGCCATAAAAATCATTAGGTGCTGTTCCCTTATGACAATTTTTG
CACGAGGTTTCTCCTGCATCATCTTGGTATTCCATGGGACCGTCACACAT
GATACACTTTCCATCTTTTTCAATTGTTCCTGTTCTACATTGAGAGCAAT
CAACATTGTAGCCATCACTTTCGAGGGGTACTGTCCCTGAAGGACATTTT
TTGCACGAGGTTGCTCCTGAATCATCCTGGTACTCCATGGAACCGTCGCA
CATGTGACATTCTCCATCGTTTTTTGAATATGTTCCTTTTCTACACGTGA
TACAACCAATGTTGTAACCATCAACGTTATGTGGTACTTTCCCTGAAGGA
CAAGTTTTGCACGAAGTAGTTCCTGTTTCGTCTTGGTATTCCATGGGACC
ATCACATTTATGACATTTCCCTTCCTCTTTTCCAAATGTCCCTTTTCTAC
AATGATAACAATATCTGTTTGACAACACCGAAGGAACTTGACCTAATGGA
CATTTTACTTTGCTCATACACTCGCCATTATTTACATTCAAACAAGAGTA
ACAATATGTTTTGGTGTCTAAGTACCCTTTAGGAGCGTATGAGGATTTAC
ACTTTTTGCACGTACTTGATTGGACTTCGTCTTGGTATTCCATCGGACCG
TCACATCGGTGGCATCTTCCATCGTCTTTTCCAAATGTTCCTTTTCCACA
AGAAGAGCATCCAATGTAGCCCCTATAATAATATGGTATTTTCCCCAAAG
GACATTTCTTGCACGAGACTTTACCTGTCTGGTCTTGATACTCCATGGCA
CCGTCACATGGGTGACATTTGCCATCATCCTTTCCAAAATATCCTTTTGC
ACAAGAAGAGCATCTAATGTAGTAGCCATTGTAATAAGATGGTGTTGATC
CTAATGAACATTTCTTGCATGAAAATTTTCCTTCCTTGTCTTGATACTCT
CTGACACCATCACATGGATAACATTTTCCATCATCTTTACCAAATGTCCC
TTTACGACACTGTGCGCAACTAGTGTTGTAACCATAATTGGTGTATGGTA
TGGATCCCAAAGGACATTTCTTGCATGAAGATTTTCCTTCTTCGTTTTGG
TATTCCATTACACCAttacaatgtttacattttcctTCTATTTCATATGT
CCCTGCACGGCACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTTTTG
ATACGGATCCCAAAGGACATTTCTTGCATGAAGTTTTTCCTTTCTCGTCT
TGGTATTCCCTGACACCATTACAATGTTCACATTTTCCTTCTATTTCATA
TGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTT
TTGATACGGATCCCAAAGAACATTTCTTGCATGAAGTTTTTCCTTTCTCG
TCTTGGTATTCCATGACACCATTACAATGTTCACATTTTCCTTCTATTTC
ATATGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAAT
CGGTTTTTGATACGGATCCCAAAGAACATTTCTTGCATGAAGATGCCCCT
ATTTCATCTTGGTATTCCCTGACACCGTCACAACGTTCACATCTTCCTTC
TATTTCATATGTTCCTTTACTACATCCCCCTTCTATTGCCGTAGACAAGG
TGAAAAACAGCAATGATGCCAATATCATACTATTGACACTCATCATTAAA
CATCAAGTTGCTTTGTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023253XLOC_023253Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038742-exon-sc0001919-1491911889:21399..23076TCONS_00038742-exon-sc0001919-1491911889:21399..23076Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1510915933:21399..23076TCONS_00038742-exon-sc0001919-1510915933:21399..23076Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1575043694:21399..23076TCONS_00038742-exon-sc0001919-1575043694:21399..23076Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1491911889:23221..23943TCONS_00038742-exon-sc0001919-1491911889:23221..23943Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1510915933:23221..23943TCONS_00038742-exon-sc0001919-1510915933:23221..23943Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1575043694:23221..23943TCONS_00038742-exon-sc0001919-1575043694:23221..23943Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1491911889:24100..25471TCONS_00038742-exon-sc0001919-1491911889:24100..25471Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1510915933:24100..25471TCONS_00038742-exon-sc0001919-1510915933:24100..25471Clytia hemisphaericaexon
TCONS_00038742-exon-sc0001919-1575043694:24100..25471TCONS_00038742-exon-sc0001919-1575043694:24100..25471Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001919supercontigsc0001919:21399..25471 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.228211	0.138743	0.0866518	0.40452	0.0551594	0.228933	0	0.0928147	0.205622	0.0523576	0	0	0	0	1.3968	3.26722	0.0747318	0	0.0886233	0.317424	5.35058	6.19711	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR006212Furin_repeat
IPR009030Growth_fac_rcpt_
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038742 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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