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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038741 ID=TCONS_00038741|Name=TCONS_00038741|organism=Clytia hemisphaerica|type=transcript|length=3314bp
AGTTAGGAAACAGTATAccaaatttcgcgattttttacacttttaaattt
tttcgcgtgtatttaattttgcgaaatttttcaaaaaactcgcGAATTTA
AGTACACGCAAAACTTAATACCAGCGAAATTTAATACCTTTGAGGTAATA
TTTTTGAATGGACCGCATTTCTATTAAGTCTAACATTGTTCGTATGGAAT
CTTTACCATCACAAACATTATAAAACAGCAGTCTCTCCTCAAATGAACCT
TTTGCGTTCATATAGATATTCTAAATATTCCTCATTAAATGTTATTATGT
AATCACCttaaatgtatataaaaaagaaagtgatGCTACAACCCTGTGAC
TCTATAGTACACACTAAAATTTATCCAGTTGAGAGTAAATTATACCAAAA
GTATCAAACAACTTAAAAGAAGTATTAAAATTGTACCCAATGGTATATTT
TTATATGAACCTGCTGATGTGGGTGGATCGTCGTAACACACTGCATTTTC
ATCTTTATAACATTTACCATTAGCAGCACCAGAATAACCCCATTTGCAAC
AAACGCATCGTATGTTAACACCATCAATCTCCTGAGGAACTTTACCCACT
TTACATTCCTTACACGATGTTGCTCTCAGTTGGTCCTGGTATTCCATGGC
ACCGACACAATTATAACATCTTCCATCATTTTTGgcatattttccttttc
cacAAGGTTGACATTCGGTTTTGAATCCCTCAGGATCGCTGGAAGATATA
AGTCCTAATGGACATCTCTTGCACGCACTTGCACCTGTTTCGTCTTGGTA
TTCCATGGGATCTTCAcATTTAAGACATTTCCCGTCTCCATTTCCAAATG
TTCCTCTTTTACACGAATAGCAGTAAATATTGAAACCATTGGAAGTATAT
GGATATTTTCCGGAGTTACATTTTTTACACGAAGATGATCCTGTTTTGTC
TTGGTACTCCATGGGACCATCACACTTATAGCATTTCCCGTCACTTTTCC
CAAAGGTTCCAATCGGGCAAGGTGAGCAACTCGTGTTAAAACCATCAATA
CTAAGTGGTACTTCTCCCAAAGGACATTTTTTGCATGAAGCAGCACCAAC
CTCATTCTGATATTCCATAACACCATCACAATCATGACATTTGCCATCAT
TCTTTCCGAAAGTTCCTATTTTACAAGATGTACAACCAAATTGATCATAT
GGTATTCTTCCCAAGGGACATTTTTTGCATGAAGATGTCCCTATTTCGTC
TTGGTATTCCATGGCACCGTTACATTTATGACATTTTCCATCTTCCTTTC
CAAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAACCACCTTGG
TAATATGGTATTTTGCCTAGggtggagtttttacaagaaattGCACCCTC
TTCATCTTGATATTCCATAGGATCGTGACACTTATGACATTTTCCATCAT
TTTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATGTGTAGACCA
TAAAAACTATATGGTCTTGTCCCTGAAGGACATTTTTTACACGAAGTTGC
ACCTACTTCATTCTGATACTCCATAGCACCATTGCATTTGTGGCATTTCC
CATCCTCTTTCCCAAAATATCCTTTGTGACAATACTGACAGCCATCATGG
AAGACTGAGGCAACTTGGCCTATTGGACATTTTGTTTTGCTGTGACATTT
TCCAgtactttcattgaaaaatccTTTTCTACATTCCAAGCAGTCAGTAG
CGAAGCCATAAAAATCATTAGGTGCTGTTCCCTTATGACAATTTTTGCAC
GAGGTTTCTCCTGCATCATCTTGGTATTCCATGGGACCGTCACACATGAT
ACACTTTCCATCTTTTTCAATTGTTCCTGTTCTACATTGAGAGCAATCAA
CATTGTAGCCATCACTTTCGAGGGGTACTGTCCCTGAAGGACAAGTTTTG
CACGAAGTAGTTCCTGTTTCGTCTTGGTATTCCATGGGACCATCACATTT
ATGACATTTCCCTTCCTCTTTTCCAAATGTCCCTTTTCTACAATGATAAC
AATATCTGTTTGACAACACCGAAGGAACTTGACCTAATGGACATTTTACT
TTGCTCATACACTCGCCATTATTTACATTCAAACAAGAGTAACAATATGT
TTTGGTGTCTAAGTACCCTTTAGGAGCGTATGAGGATTTACACTTTTTGC
ACGTACTTGATTGGACTTCGTCTTGGTATTCCATCGGACCGTCACATCGG
TGGCATCTTCCATCGTCTTTTCCAAATGTTCCTTTTCCACAAGAAGAGCA
TCCAATGTAGCCCCTATAATAATATGGTATTTTCCCCAAAGGACATTTCT
TGCACGAGACTTTACCTGTCTGGTCTTGATACTCCATGGCACCGTCACAT
GGGTGACATTTGCCATCATCCTTTCCAAAATATCCTTTTGCACAAGAAGA
GCATCTAATGTAGTAGCCATTGTAATAAGATGGTGTTGATCCTAATGAAC
ATTTCTTGCATGAAAATTTTCCTTCCTTGTCTTGATACTCTCTGACACCA
TCACATGGATAACATTTTCCATCATCTTTACCAAATGTCCCTTTACGACA
CTGTGCGCAACTAGTGTTGTAACCATAATTGGTGTATGGTATGGATCCCA
AAGGACATTTCTTGCATGAAGATTTTCCTTCTTCGTTTTGGTATTCCATT
ACACCAttacaatgtttacattttcctTCTATTTCATATGTCCCTGCACG
GCACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTTTTGATACGGATC
CCAAAGGACATTTCTTGCATGAAGTTTTTCCTTTCTCGTCTTGGTATTCC
CTGACACCATTACAATGTTCACATTTTCCTTCTATTTCATATGTCCCTGT
ATCACACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTTTTGATACGG
ATCCCAAAGAACATTTCTTGCATGAAGTTTTTCCTTTCTCGTCTTGGTAT
TCCATGACACCATTACAATGTTCACATTTTCCTTCTATTTCATATGTCCC
TGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAATCGGTTTTTG
ATACGGATCCCAAAGAACATTTCTTGCATGAAGATGCCCCTATTTCATCT
TGGTATTCCCTGACACCGTCACAACGTTCACATCTTCCTTCTATTTCATA
TGTTCCTTTACTACATCCCCCTTCTATTGCCGTAGACAAGGTGAAAAACA
GCAATGATGCCAATATCATACTATTGACACTCATCATTAAACATCAAGTT
GCTTTGTGTTCCAT Run BLAST on NCBI transcript from alignment at sc0001919:21399..25471+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038741 ID=TCONS_00038741|Name=TCONS_00038741|organism=Clytia hemisphaerica|type=transcript|length=4073bp|location=Sequence derived from alignment at sc0001919:21399..25471+ (Clytia hemisphaerica)
AGTTAGGAAACAGTATAccaaatttcgcgattttttacacttttaaattt
tttcgcgtgtatttaattttgcgaaatttttcaaaaaactcgcGAATTTA
AGTACACGCAAAACTTAATACCAGCGAAATTTAATACCTTTGAGGTAATA
TTTTTGAATGGACCGCATTTCTATTAAGTCTAACATTGTTCGTATGGAAT
CTTTACCATCACAAACATTATAAAACAGCAGTCTCTCCTCAAATGAACCT
TTTGCGTTCATATAGATATTCTAAATATTCCTCATTAAATGTTATTATGT
AATCACCttaaatgtatataaaaaagaaagtgatGCTACAACCCTGTGAC
TCTATAGTACACACTAAAATTTATCCAGTTGAGAGTAAATTATACCAAAA
GTATCAAACAACTTAAAAGAAGTATTAAAATTGTACCCAATGGTATATTT
TTATATGAACCTGCTGATGTGGGTGGATCGTCGTAACACACTGCATTTTC
ATCTTTATAACATTTACCATTAGCAGCACCAGAATAACCCCATTTGCAAC
AAACGCATCGTATGTTAACACCATCAATCTCCTGAGGAACTTTACCCACT
TTACATTCCTTACACGATGTTGCTCTCAGTTGGTCCTGGTATTCCATGGC
ACCGACACAATTATAACATCTTCCATCATTTTTGgcatattttccttttc
cacAAGGTTGACATTCGGTTTTGAATCCCTCAGGATCGCTGGAAGATATA
AGTCCTAATGGACATCTCTTGCACGCACTTGCACCTGTTTCGTCTTGGTA
TTCCATGGGATCTTCAcatttatgacattttccgtCATTTTTGCCAAATG
TTCCCTTTTTACATAAAGAGCAACCAGAGTTATGTTCATTAGGAATTTGT
CCCAAAGGACATGTTTTACAGGAAATTTCATCTCTATCATCTTGGTATTC
CATGAGACCGTCACATTTGTAACATTTTCCATCTTTTTCAAATGATCCAA
TTGTACAAGAAGAGCAGTCGGTGTTGGAGTCATTAGGTATTTCCCCTGCA
GGACATTTCTTGCAAAAAGTCGCACCCTGTCCATTTTGATATTCCATGGG
ACCGTCACACTTATGACattttccatcttcttttcCAAAAGTTCCTTCTT
TGCAAGATAAACATACAATATTATTACTACCACGTGTAGACAGTATTGTC
CCTAAAGGACACTTATTACACGAAGATGCTCCTATATCGTTCTGATATTC
CATGGGACTGTCACATTTATAACATTTCCCATCGAATTTTCCAAATGTTC
CTCTGTCGCAAGGAGAGCATGTAGTTTTAAAACCGTTGTTGTCGTACGGT
ATTTTTCCTTGTGCGCAGCTCTTACATGAAGATGCTCCTGTTTCGTCTTG
ATATTCCATTGCGCCTGTACATTTAAGACATTTCCCGTCTCCATTTCCAA
ATGTTCCTCTTTTACACGAATAGCAGTAAATATTGAAACCATTGGAAGTA
TATGGATATTTTCCGGAGTTACATTTTTTACACGAAGATGATCCTGTTTT
GTCTTGGTACTCCATGGGACCATCACACTTATAGCATTTCCCGTCACTTT
TCCCAAAGGTTCCAATCGGGCAAGGTGAGCAACTCGTGTTAAAACCATCA
ATACTAAGTGGTACTTCTCCCAAAGGACATTTTTTGCATGAAGCAGCACC
AACCTCATTCTGATATTCCATAACACCATCACAATCATGACATTTGCCAT
CATTCTTTCCGAAAGTTCCTATTTTACAAGATGTACAACCAAATTGATCA
TATGGTATTCTTCCCAAGGGACATTTTTTGCATGAAGATGTCCCTATTTC
GTCTTGGTATTCCATGGCACCGTTACATTTATGACATTTTCCATCTTCCT
TTCCAAAAGTTCCTTTGTTACAAGAAACAATACCAGAGGCAAAACCACCT
TGGTAATATGGTATTTTGCCTAGggtggagtttttacaagaaattGCACC
CTCTTCATCTTGATATTCCATAGGATCGTGACACTTATGACATTTTCCAT
CATTTTTGCTGAAAGTTCCTTTTCTACAAGTGATACAAGCAATGTGTAGA
CCATAAAAACTATATGGTCTTGTCCCTGAAGGACATTTTTTACACGAAGT
TGCACCTACTTCATTCTGATACTCCATAGCACCATTGCATTTGTGGCATT
TCCCATCCTCTTTCCCAAAATATCCTTTGTGACAATACTGACAGCCATCA
TGGAAGACTGAGGCAACTTGGCCTATTGGACATTTTGTTTTGCTGTGACA
TTTTCCAgtactttcattgaaaaatccTTTTCTACATTCCAAGCAGTCAG
TAGCGAAGCCATAAAAATCATTAGGTGCTGTTCCCTTATGACAATTTTTG
CACGAGGTTTCTCCTGCATCATCTTGGTATTCCATGGGACCGTCACACAT
GATACACTTTCCATCTTTTTCAATTGTTCCTGTTCTACATTGAGAGCAAT
CAACATTGTAGCCATCACTTTCGAGGGGTACTGTCCCTGAAGGACATTTT
TTGCACGAGGTTGCTCCTGAATCATCCTGGTACTCCATGGAACCGTCGCA
CATGTGACATTCTCCATCGTTTTTTGAATATGTTCCTTTTCTACACGTGA
TACAACCAATGTTGTAACCATCAACGTTATGTGGTACTTTCCCTGAAGGA
CAAGTTTTGCACGAAGTAGTTCCTGTTTCGTCTTGGTATTCCATGGGACC
ATCACATTTATGACATTTCCCTTCCTCTTTTCCAAATGTCCCTTTTCTAC
AATGATAACAATATCTGTTTGACAACACCGAAGGAACTTGACCTAATGGA
CATTTTACTTTGCTCATACACTCGCCATTATTTACATTCAAACAAGAGTA
ACAATATGTTTTGGTGTCTAAGTACCCTTTAGGAGCGTATGAGGATTTAC
ACTTTTTGCACGTACTTGATTGGACTTCGTCTTGGTATTCCATCGGACCG
TCACATCGGTGGCATCTTCCATCGTCTTTTCCAAATGTTCCTTTTCCACA
AGAAGAGCATCCAATGTAGCCCCTATAATAATATGGTATTTTCCCCAAAG
GACATTTCTTGCACGAGACTTTACCTGTCTGGTCTTGATACTCCATGGCA
CCGTCACATGGGTGACATTTGCCATCATCCTTTCCAAAATATCCTTTTGC
ACAAGAAGAGCATCTAATGTAGTAGCCATTGTAATAAGATGGTGTTGATC
CTAATGAACATTTCTTGCATGAAAATTTTCCTTCCTTGTCTTGATACTCT
CTGACACCATCACATGGATAACATTTTCCATCATCTTTACCAAATGTCCC
TTTACGACACTGTGCGCAACTAGTGTTGTAACCATAATTGGTGTATGGTA
TGGATCCCAAAGGACATTTCTTGCATGAAGATTTTCCTTCTTCGTTTTGG
TATTCCATTACACCAttacaatgtttacattttcctTCTATTTCATATGT
CCCTGCACGGCACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTTTTG
ATACGGATCCCAAAGGACATTTCTTGCATGAAGTTTTTCCTTTCTCGTCT
TGGTATTCCCTGACACCATTACAATGTTCACATTTTCCTTCTATTTCATA
TGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAGGTTT
TTGATACGGATCCCAAAGAACATTTCTTGCATGAAGTTTTTCCTTTCTCG
TCTTGGTATTCCATGACACCATTACAATGTTCACATTTTCCTTCTATTTC
ATATGTCCCTGTATCACACTGTGCGCAACTAGTGTTGTAACCATAATAAT
CGGTTTTTGATACGGATCCCAAAGAACATTTCTTGCATGAAGATGCCCCT
ATTTCATCTTGGTATTCCCTGACACCGTCACAACGTTCACATCTTCCTTC
TATTTCATATGTTCCTTTACTACATCCCCCTTCTATTGCCGTAGACAAGG
TGAAAAACAGCAATGATGCCAATATCATACTATTGACACTCATCATTAAA
CATCAAGTTGCTTTGTGTTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038741-exon-sc0001919-1491911889:21399..22215 | TCONS_00038741-exon-sc0001919-1491911889:21399..22215 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1510915933:21399..22215 | TCONS_00038741-exon-sc0001919-1510915933:21399..22215 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1575043694:21399..22215 | TCONS_00038741-exon-sc0001919-1575043694:21399..22215 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1491911889:22819..23943 | TCONS_00038741-exon-sc0001919-1491911889:22819..23943 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1510915933:22819..23943 | TCONS_00038741-exon-sc0001919-1510915933:22819..23943 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1575043694:22819..23943 | TCONS_00038741-exon-sc0001919-1575043694:22819..23943 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1491911889:24100..25471 | TCONS_00038741-exon-sc0001919-1491911889:24100..25471 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1510915933:24100..25471 | TCONS_00038741-exon-sc0001919-1510915933:24100..25471 | Clytia hemisphaerica | exon |
| TCONS_00038741-exon-sc0001919-1575043694:24100..25471 | TCONS_00038741-exon-sc0001919-1575043694:24100..25471 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001919 | supercontig | sc0001919:21399..25471 + |
Blast
The following BLAST results are available for this feature:
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