TCONS_00038732 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038732
Unique NameTCONS_00038732
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length303

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038732 ID=TCONS_00038732|Name=TCONS_00038732|organism=Clytia hemisphaerica|type=transcript|length=303bp
cacctcgttaccactcgttaccacatcgttaccactcgttaccactcgtt
accactcgttacctcttttagtaacaacgtcTTTGAAGACTCCAACTTTC
TCTCGTCACCTGGATTGAAGTTATAAATCATTGGGTTCTCCAACATTCAC
TAGCTgATATAAAGCGAACAACGAATTTGAGCAAAACCACCAttggtcaa
attttgaaaagccTGAGAGAGCAGTGCCAAGGTTATTTACAAGATTTCCC
AATTGAAGTAGGAGGACCTGGTATTCAAGTAAAGATGGAAATGATAAAGG
TAT
Run BLAST on NCBI

transcript from alignment at sc0001917:18359..19019-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038732 ID=TCONS_00038732|Name=TCONS_00038732|organism=Clytia hemisphaerica|type=transcript|length=661bp|location=Sequence derived from alignment at sc0001917:18359..19019- (Clytia hemisphaerica)
CACCTCGTTACCACTCGTTACCACATCGTTACCACTCGTTACCACTCGTT
ACCACTCGTTACCTCTTTTAGTAACAACGTCTTTGAAGACTCCAACTTTC
TCTCGTCACCTGGATTGAAGTTATAAATCATTGGGTTCTCCAACATTCAC
TAGCTGTAAGTTAGTTAATTTCTCTACCAAAAAAAACTATGGTCGTATTT
GAGCTTGACACATGCCCATTTCTATGGTTACATGTCTATTTCTTTTAAAA
GAAAGGCGGGGGGCATTCGAGGAAAACTTGAAGTATGTATTACATGGTAG
ATTTTGCTGGGTTTTGAACCAAACCTAAGAATACCGTAAGAATATTTAAG
GATGATTTTTTGTAAAAGGTTATGATGATGAATTAAAAAAACACTATTCC
TATAAAAAAACAGCGTGTAAGAGTCTGAGGTTTTTTAAGTTGAAAACACT
GAATTGAAATGAAACTACCAAAAAAAGGTATTATACTGGTTCTTAAAAAA
ATATTTTTTACAGGATATAAAGCGAACAACGAATTTGAGCAAAACCACCA
TTGGTCAAATTTTGAAAAGCCTGAGAGAGCAGTGCCAAGGTTATTTACAA
GATTTCCCAATTGAAGTAGGAGGACCTGGTATTCAAGTAAAGATGGAAAT
GATAAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023248XLOC_023248Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038732-exon-sc0001917-1575043694:18865..19019TCONS_00038732-exon-sc0001917-1575043694:18865..19019Clytia hemisphaericaexon
TCONS_00038732-exon-sc0001917-1575043694:18359..18506TCONS_00038732-exon-sc0001917-1575043694:18359..18506Clytia hemisphaericaexon
TCONS_00038732-exon-sc0001917-1510915933:18865..19019TCONS_00038732-exon-sc0001917-1510915933:18865..19019Clytia hemisphaericaexon
TCONS_00038732-exon-sc0001917-1510915933:18359..18506TCONS_00038732-exon-sc0001917-1510915933:18359..18506Clytia hemisphaericaexon
TCONS_00038732-exon-sc0001917-1491911889:18865..19019TCONS_00038732-exon-sc0001917-1491911889:18865..19019Clytia hemisphaericaexon
TCONS_00038732-exon-sc0001917-1491911889:18359..18506TCONS_00038732-exon-sc0001917-1491911889:18359..18506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001917supercontigsc0001917:18359..19019 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.445399	0.367683	0	0.145111	0.508472	0	0	1.93194	3.04028	0.947848	0.730045	1.32487	0.987411	0	2.23759	1.46686	0	0.635626	1.49455	1.98911	3.10804	1.34192	0	0	1.14355	0	4.31383	0	3.38324	6.58437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038732 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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