TCONS_00038721 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038721
Unique NameTCONS_00038721
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length594

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038721 ID=TCONS_00038721|Name=TCONS_00038721|organism=Clytia hemisphaerica|type=transcript|length=594bp
ATTTCACCATTGAACAATTTGTCCATGTAGTTCATGAACCCTGCTCTCTG
ccttttaacatttttatctGCATCTgtagacattttgatttttgatttta
tttctttgtatttcttatttatttatttcttatttgaATTACTAGTCTTC
ACTCACACCAGCGAGCACAAGTTAAGGTCAGAGCAACAGAGTCAAGAACC
ATACAGTCAATAATAATCGATATCAATAATAATCCAGGAACAGCaatcaa
gttccaaataaacaataTAAATCAATAACAGGAACCAACAATCAAGTATC
AAGTTCCAAAAATACAATATAATcaatcaaattactcaattataTGAACT
GTCCAAGTTCAAAACAACAATGTGTAATAAACCAACAATTTTCACCATAT
GAACATTCAAGTTCAAAATAAGTTCACCATACATAAGCTACCAAgcttac
aaaatcaaaacattgaacttCACCCGAGTTCAAACAAGCTACCAagctta
taaaaaatcaaaacattgaatgaACTTCACCTGAGTTCAAACAAATAAAT
TCTTCAGTGAAAACACGGTTTTCACAAAActaattaaagaaaaa
Run BLAST on NCBI

transcript from alignment at sc0001913:32017..32610

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038721 ID=TCONS_00038721|Name=TCONS_00038721|organism=Clytia hemisphaerica|type=transcript|length=594bp|location=Sequence derived from alignment at sc0001913:32017..32610 (Clytia hemisphaerica)
tttttctttaattagTTTTGTGAAAACCGTGTTTTCACTGAAGAATTTAT
TTGTTTGAACTCAGGTGAAGTtcattcaatgttttgattttttataagct
TGGTAGCTTGTTTGAACTCGGGTGaagttcaatgttttgattttgtaagc
TTGGTAGCTTATGTATGGTGAACTTATTTTGAACTTGAATGTTCATATGG
TGAAAATTGTTGGTTTATTACACATTGTTGTTTTGAACTTGGACAGTTCA
tataattgagtaatttgattgATTATATTGTATTTTTGGAACTTGATACT
TGATTGTTGGTTCCTGTTATTGATTTAtattgtttatttggaacttgatt
GCTGTTCCTGGATTATTATTGATATCGATTATTATTGACTGTATGGTTCT
TGACTCTGTTGCTCTGACCTTAACTTGTGCTCGCTGGTGTGAGTGAAGAC
TAGTAATtcaaataagaaataaataaataagaaatacaaagaaataaaat
caaaaatcaaaatgtctacAGATGCagataaaaatgttaaaaggCAGAGA
GCAGGGTTCATGAACTACATGGACAAATTGTTCAATGGTGAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023237XLOC_023237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038721-exon-sc0001913-1491911889:32017..32610TCONS_00038721-exon-sc0001913-1491911889:32017..32610Clytia hemisphaericaexon
TCONS_00038721-exon-sc0001913-1510915933:32017..32610TCONS_00038721-exon-sc0001913-1510915933:32017..32610Clytia hemisphaericaexon
TCONS_00038721-exon-sc0001913-1575043694:32017..32610TCONS_00038721-exon-sc0001913-1575043694:32017..32610Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001913supercontigsc0001913:32017..32610 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.867314	0.663085	0.843451	0	0.124269	0	0.265933	0.116314	0.496928	0.333813	0.186721	0.262695	0.447656	0.793794	0.167211	0.899288	0.352016	0.647781	0.109647	0.113244	1.24447	0.684013	1.09848	1.22966	0.312699	0.380957	0.353958	0.269701	0.738916	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038721 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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