TCONS_00038718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038718
Unique NameTCONS_00038718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038718 ID=TCONS_00038718|Name=TCONS_00038718|organism=Clytia hemisphaerica|type=transcript|length=875bp
cccgatcccattcttgctcccgttcccattcttgctcccgatcccattct
tgctcccgatcCCATTATTGCTCCCATTCTCCTTTTCGTCTTCGAATAAT
GGAAATCCGCCTCATTCCGCCCTGACGCGCGCcacttttttttgaatttc
gaatgtaTGACGTATTTCGTACTAGCTCGGTTCGATGTATTGttcgattc
ttttgtttttcttttagccaatcaaatccGTTGGGATCAAAGTTCGAAAA
TGTTCCTTTTGAGTTCAATTGGGCCGGATCATTCtttgaaagtttcaagt
caGAACATGTGATGAGgtaagaaattttcttccaacaGTTTCCTTTTTGC
TCTCTTTTCTTCCATCTTGGTACTGTGCTGCCTACTATCTTGCTGCAAAC
AATGAGTGGAAAACTGTTCCCTTTAAAATTCGAAAATGGAGAATCCGGTG
TTCTCTGTTTTCAAAGTGGGCAACCTGTAACAAATTACGAGCCAAAAGTC
ATTGGTATCTACCGAGAGTATGACTGCCTGCAAGGCTTCACTTTAAATCA
TCCTCCTGTGGATTGTAAGAACAAGAAAGAGAAAAGGtataatttttgct
ttcaattttgcTTTCATTAACAGATTTCTCCCTCTACTGAACTTTGGTTT
GCTGGTTTTCAAAGAAAGCGATTGAATTTGAGAATAGCTGAAACCTGCAG
ACACTGTATTCAGTGCGGCAATTTATGCAAGCGAATCTTTTGCTCTTCGT
GCATCGTCATGTTATATGATGGAATCAATTTGATCGAATCCGATATGAGA
CATATTAAAGTTCACCACACAAACCTCTGATGATTTATCAATCGATCcaa
acattgaaaaagaattggaTTGTCT
Run BLAST on NCBI

transcript from alignment at sc0001912:24046..24920

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038718 ID=TCONS_00038718|Name=TCONS_00038718|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at sc0001912:24046..24920 (Clytia hemisphaerica)
AGACAAtccaattctttttcaatgtttgGATCGATTGATAAATCATCAGA
GGTTTGTGTGGTGAACTTTAATATGTCTCATATCGGATTCGATCAAATTG
ATTCCATCATATAACATGACGATGCACGAAGAGCAAAAGATTCGCTTGCA
TAAATTGCCGCACTGAATACAGTGTCTGCAGGTTTCAGCTATTCTCAAAT
TCAATCGCTTTCTTTGAAAACCAGCAAACCAAAGTTCAGTAGAGGGAGAA
ATCTGTTAATGAAAgcaaaattgaaagcaaaaattataCCTTTTCTCTTT
CTTGTTCTTACAATCCACAGGAGGATGATTTAAAGTGAAGCCTTGCAGGC
AGTCATACTCTCGGTAGATACCAATGACTTTTGGCTCGTAATTTGTTACA
GGTTGCCCACTTTGAAAACAGAGAACACCGGATTCTCCATTTTCGAATTT
TAAAGGGAACAGTTTTCCACTCATTGTTTGCAGCAAGATAGTAGGCAGCA
CAGTACCAAGATGGAAGAAAAGAGAGCAAAAAGGAAACtgttggaagaaa
atttcttacCTCATCACATGTTCtgacttgaaactttcaaaGAATGATCC
GGCCCAATTGAACTCAAAAGGAACATTTTCGAACTTTGATCCCAACggat
ttgattggctaaaagaaaaacaaaagaatcgaaCAATACATCGAACCGAG
CTAGTACGAAATACGTCAtacattcgaaattcaaaaaaaagtgGCGCGCG
TCAGGGCGGAATGAGGCGGATTTCCATTATTCGAAGACGAAAAGGAGAAT
GGGAGCAATAATGGgatcgggagcaagaatgggatcgggagcaagaatgg
gaacgggagcaagaatgggatcggg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023234XLOC_023234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038718-exon-sc0001912-1491911889:24046..24920TCONS_00038718-exon-sc0001912-1491911889:24046..24920Clytia hemisphaericaexon
TCONS_00038718-exon-sc0001912-1510915933:24046..24920TCONS_00038718-exon-sc0001912-1510915933:24046..24920Clytia hemisphaericaexon
TCONS_00038718-exon-sc0001912-1575043694:24046..24920TCONS_00038718-exon-sc0001912-1575043694:24046..24920Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001912supercontigsc0001912:24046..24920 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0532699	0	0	0	0.359187	0.510902	0.616382	0.833515	0.493785	0.222412	2.05084	0.461207	1.16913	0.846227	0.0302484	0.0324612	0	0	0.113254	0.0592561	0	0	0	0	6.11971	6.6357	0	0.0779541	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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