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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038692 ID=TCONS_00038692|Name=TCONS_00038692|organism=Clytia hemisphaerica|type=transcript|length=1257bp
CTTCTAAGAGAAAGCAGAGTGAGAAgggaaaattaaaatcaattcgaaat
aaGGTCGGACAGTTGGGTAGAGTGACTCGGACTCCAATCGTTGTTTTAGC
TTACACTGCAGATGGcaatatcaaaagttatgGTTCATCAAAAGGAATGA
AGGAATTTGCTCAAGACccagcaataattcaaaaattcaaagattCTCTT
CCAANACAgcactgataaatgaaaactaaattttacttgttttaatattt
atgtttacaaatcttttgctttttatatttgatttaatagtaagataaga
gatattttgaatttagctgaacagcccccagagtctcagtcagatcatct
aggctccccccaacaatctaggtccccccaaatattttggtaattttagc
ccccaggctctttaaaggccaaaatatttcttagcccccccccaaaaata
agggggggggctgaacctatgacggttcccgtcgtcgcaaacgttGGTTA
AGGTTTTGCTTGCCCATCGAAAGCCCTTAAACTATAGGCGAGGGATGGGT
TAAGGTAAGATGAAAgcaaagagaaaaacaaaacaattctcTTTGTATTT
TGTGATATGTATGCCAATTAATTCAAAAACTAAAggatttgtataaaaaa
taacATAACGATCTAATTTAAATTACGAAGGGTGCCCTTATACCTAGCAA
GAAGCCTCAATTTTCAAGGAGAGGGGCTCATTGTTCGCGAGTCATGCCGT
CCAATATGTTAACTTAACGTGTTGATAACTTAAGACTGGTGAAATTACTC
CCAATCCAATCTAACCCAACATGCATTTGATCCAACTTAGAATGATTTTG
CATGAAATGCTGGATTCATTTGCACTGGCCTTTAGCGTGTTCGTAAAAAT
ATGCGAAATCGTGCAACGAAAAGAGTGCCACACCCctatatttgaaactt
tgtgaagTCGTGGCACTTTTTTCATAAAGTTGACGTCAGAACTTTCTTTC
GTTTTAAAATGGGAGTGTAGGGGAATCTTCTAATGTGCGTTTTCTTTTTT
CCCTTGTCAAACTTAACTCGAGACTTTTCATCTCCAATTAAATAtattga
agatgaaaagtttACTCCCTTCAAGAAACGCTGAGCTTGCAAAGAGATTG
CAGTTATTCAACCAACGATCAAAACAAAAGAGAGCGCGCGGCGTAACTTT
AGTTGTTCGATTCAACACCGCAATTTCTTCACtttaataaaacaatttaa
TGGCCAG Run BLAST on NCBI transcript from alignment at sc0001911:18251..21222+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038692 ID=TCONS_00038692|Name=TCONS_00038692|organism=Clytia hemisphaerica|type=transcript|length=2972bp|location=Sequence derived from alignment at sc0001911:18251..21222+ (Clytia hemisphaerica)
CTTCTAAGAGAAAGCAGAGTGAGAAgggaaaattaaaatcaattcgaaat
aaGGTAAGAAAAAGACCTTTCCTGAAGCCCCCTTTAGAGTGACTTTTGAT
TAAGataaattttgattgattgCACATATGACTGgttgagtttttttttg
gtATAGTGAGAGATTCCTGAAAACTTTATTTCATTTGGTtgactagatca
aaagttatttcaCTTTCTGCATTATTATTTCTTACTTTGCAAGGCGTCTG
ATCACTTTATATACTTTGCAGCTTTTTCATGTAAACatgatttttcaaat
ctttaaatTAATAGTAAAGCAATgagaatttcttttaaatttgaaatttt
tacaaatttttactttaatatTAATACctgaaattaaagaaaaaagtttg
aaaaattcttagttTGAACTTTGAGATATCATTAAATTTGATCACGTGAT
AGATTTCAGGAAAGGTAGGCAAACCCAAAGGTAGGTAAACCTTATCTCAA
AATAATCTGCAGTTTATGTCATGatgataaaattttagagtcaaCCAACG
AAAAATTATAGCATATCTTATAGCATGATATTTTATCACAGCTTGATTCA
AAAGTTGAAACcttttttatccccactgtagaaattttttaagtaaggca
agtacttttttattttctggtttacggacatttaGAGATGATCTTTTGGa
ccggaggatggaaaaaaaataaaaataaaattgtcgttttcaaactttaa
tgttGTGTTGGAAAGAATAAAATGTGTTTTGAGGAAACTTGCATACacca
gaaaatcaaagaaagtttttcagctAGAAAATTTTGTTGAGCGCCATTGG
ATGAGGCATATTGGGAAAAAGAGATTGCTGTATCCTATTTTCTTCCTTTC
CTGCTCTTATAAAAtgaagttttctaaaaaaaatccaTTTCATGGCAGAT
CAAACAGAGTCGGAagtgcaaaaataaataaaatttctgtgaatttcaat
tctatttttattttatttttgcaaaataatcgTCGGCgattccgtaaacc
agaaaataaaaaagtaattgcctaagGGTAACTATTTTAATCCCAGTTCA
TGTAAAGTTAAAAGAATTTAGTATGTAGTAAAGAAAAGGAATTCTGAATT
TAAAAGCGTCATCATGAATTTGATTATAATTAGTACACTGTTTGATCTAA
CAGGTCGGACAGTTGGGTAGAGTGACTCGGACTCCAATCGTTGTTTTAGC
TTACACTGCAGATGGcaatatcaaaagttatggtgaGATTTATCTTAGTT
TTCTTGTGTATTTAGCGAAGAGATATAAACACTAGAAAGAAATTTAGTCA
AATTGTAAATGAGCTGAAATTAgtattataaaaaacacttgCCAATCGTG
CCAATAAGGTTCCACCTAAAACCTACTTCCAAGCAATAAGGAAGGGAATG
ACTCAAAAGGTTTCAGTTCGAATTCCGACTCGATCAGAAGGTATGGGACC
TAGAGAAAAACCCTGTAAAACAATATTAAAAATTTCACATTTCACATGAG
GAAAGGCAAGACAGAAAATTGACTGTCTAAACTTGGGCTTATTAAAGCCT
TTCCCAtccaaaattatctttccaaggAGGAAAGATCTTTTATTGTATTT
TGAATTATACCGTTTTTCCTTAGAAATCAATGTATTACTGTATGCGGCAC
TTTATTTTTTAAGGTTGTTGATATTTAGTCAAGATAAGtcattgtagaaa
aaaaaagaaaaacgtgaagggtatttttgttaattatgtGTATTTACGGT
TATTTATATTTATGGTTGTTGATATTTTATATAATGGCTTTTTCAAGGTT
CATCAAAAGGAATGAAGGAATTTGCTCAAGACccagcaataattcaaaaa
ttcaaagattCTCTTCCAANACAgcactgataaatgaaaactaaatttta
cttgttttaatatttatgtttacaaatcttttgctttttatatttgattt
aatagtaagataagagatattttgaatttagctgaacagcccccagagtc
tcagtcagatcatctaggctccccccaacaatctaggtccccccaaatat
tttggtaattttagcccccaggctctttaaaggccaaaatatttcttagc
ccccccccaaaaataagggggggggctgaacctatgacggttcccgtcgt
cgcaaacgttGGTTAAGGTTTTGCTTGCCCATCGAAAGCCCTTAAACTAT
AGGCGAGGGATGGGTTAAGGTAAGATGAAAgcaaagagaaaaacaaaaca
attctcTTTGTATTTTGTGATATGTATGCCAATTAATTCAAAAACTAAAg
gatttgtataaaaaataacATAACGATCTAATTTAAATTACGAAGGGTGC
CCTTATACCTAGCAAGAAGCCTCAATTTTCAAGGAGAGGGGCTCATTGTT
CGCGAGTCATGCCGTCCAATATGTTAACTTAACGTGTTGATAACTTAAGA
CTGGTGAAATTACTCCCAATCCAATCTAACCCAACATGCATTTGATCCAA
CTTAGAATGATTTTGCATGAAATGCTGGATTCATTTGCACTGGCCTTTAG
CGTGTTCGTAAAAATATGCGAAATCGTGCAACGAAAAGAGTGCCACACCC
ctatatttgaaactttgtgaagTCGTGGCACTTTTTTCATAAAGTTGACG
TCAGAACTTTCTTTCGTTTTAAAATGGGAGTGTAGGGGAATCTTCTAATG
TGCGTTTTCTTTTTTCCCTTGTCAAACTTAACTCGAGACTTTTCATCTCC
AATTAAATAtattgaagatgaaaagtttACTCCCTTCAAGAAACGCTGAG
CTTGCAAAGAGATTGCAGTTATTCAACCAACGATCAAAACAAAAGAGAGC
GCGCGGCGTAACTTTAGTTGTTCGATTCAACACCGCAATTTCTTCACttt
aataaaacaatttaaTGGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038692-exon-sc0001911-1491911889:18251..18303 | TCONS_00038692-exon-sc0001911-1491911889:18251..18303 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1510915933:18251..18303 | TCONS_00038692-exon-sc0001911-1510915933:18251..18303 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1575043694:18251..18303 | TCONS_00038692-exon-sc0001911-1575043694:18251..18303 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1491911889:19454..19532 | TCONS_00038692-exon-sc0001911-1491911889:19454..19532 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1510915933:19454..19532 | TCONS_00038692-exon-sc0001911-1510915933:19454..19532 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1575043694:19454..19532 | TCONS_00038692-exon-sc0001911-1575043694:19454..19532 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1491911889:20098..21222 | TCONS_00038692-exon-sc0001911-1491911889:20098..21222 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1510915933:20098..21222 | TCONS_00038692-exon-sc0001911-1510915933:20098..21222 | Clytia hemisphaerica | exon |
| TCONS_00038692-exon-sc0001911-1575043694:20098..21222 | TCONS_00038692-exon-sc0001911-1575043694:20098..21222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001911 | supercontig | sc0001911:18251..21222 + |
Blast
The following BLAST results are available for this feature:
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