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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038691 ID=TCONS_00038691|Name=TCONS_00038691|organism=Clytia hemisphaerica|type=transcript|length=1391bp
GCCAATTTTCAGACAAATCTTTGATTGGGGATTCAGACCTCTCTAcgaaa
tttcttttcatttgtcTGATCAATAATTATTTGCATTCTagatattgaaa
taaaatattattttgagctATGGATGCTAGTAGTGCACAAAACAATGACC
TTGAAAGGAGGGCTGGCTCACATGGTCAATATAAAATGAAcaagTTTACA
TTCATTGAGAATGCTTCTAAGAGAAAGCAGAGTGAGAAgggaaaattaaa
atcaattcgaaataaGGTTCATCAAAAGGAATGAAGGAATTTGCTCAAGA
CccagcaataattcaaaaattcaaagattCTCTTCCAANACAgcactgat
aaatgaaaactaaattttacttgttttaatatttatgtttacaaatcttt
tgctttttatatttgatttaatagtaagataagagatattttgaatttag
ctgaacagcccccagagtctcagtcagatcatctaggctccccccaacaa
tctaggtccccccaaatattttggtaattttagcccccaggctctttaaa
ggccaaaatatttcttagcccccccccaaaaataagggggggggctgaac
ctatgacggttcccgtcgtcgcaaacgttGGTTAAGGTTTTGCTTGCCCA
TCGAAAGCCCTTAAACTATAGGCGAGGGATGGGTTAAGGTAAGATGAAAg
caaagagaaaaacaaaacaattctcTTTGTATTTTGTGATATGTATGCCA
ATTAATTCAAAAACTAAAggatttgtataaaaaataacATAACGATCTAA
TTTAAATTACGAAGGGTGCCCTTATACCTAGCAAGAAGCCTCAATTTTCA
AGGAGAGGGGCTCATTGTTCGCGAGTCATGCCGTCCAATATGTTAACTTA
ACGTGTTGATAACTTAAGACTGGTGAAATTACTCCCAATCCAATCTAACC
CAACATGCATTTGATCCAACTTAGAATGATTTTGCATGAAATGCTGGATT
CATTTGCACTGGCCTTTAGCGTGTTCGTAAAAATATGCGAAATCGTGCAA
CGAAAAGAGTGCCACACCCctatatttgaaactttgtgaagTCGTGGCAC
TTTTTTCATAAAGTTGACGTCAGAACTTTCTTTCGTTTTAAAATGGGAGT
GTAGGGGAATCTTCTAATGTGCGTTTTCTTTTTTCCCTTGTCAAACTTAA
CTCGAGACTTTTCATCTCCAATTAAATAtattgaagatgaaaagtttACT
CCCTTCAAGAAACGCTGAGCTTGCAAAGAGATTGCAGTTATTCAACCAAC
GATCAAAACAAAAGAGAGCGCGCGGCGTAACTTTAGTTGTTCGATTCAAC
ACCGCAATTTCTTCACtttaataaaacaatttaaTGGCCAG Run BLAST on NCBI transcript from alignment at sc0001911:17888..21222+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038691 ID=TCONS_00038691|Name=TCONS_00038691|organism=Clytia hemisphaerica|type=transcript|length=3335bp|location=Sequence derived from alignment at sc0001911:17888..21222+ (Clytia hemisphaerica)
GCCAATTTTCAGACAAATCTTTGATTGGGGATTCAGACCTCTCTAcgaaa
tttcttttcatttgtcTGATCAATAATTATTTGCATTCTagatattgaaa
taaaatattattttgagctATGGATGCTAGTAGTGCACAAAACAATGACC
TTGAAAGGAGGGCTGGCTCACATGGTCAATATAAAATGAAcaaggtttgt
ttttttataaattatgaTTATTAATGCggcttcaaattagttctctttAA
TCAGAGAGCAATTTTGTGATCGAAATTTTAGGGTTATATTCTGTTATAAA
ttgaaaagtaacaaaatttaatttatatgGATTGTCTCTTTCAGTTTACA
TTCATTGAGAATGCTTCTAAGAGAAAGCAGAGTGAGAAgggaaaattaaa
atcaattcgaaataaGGTAAGAAAAAGACCTTTCCTGAAGCCCCCTTTAG
AGTGACTTTTGATTAAGataaattttgattgattgCACATATGACTGgtt
gagtttttttttggtATAGTGAGAGATTCCTGAAAACTTTATTTCATTTG
GTtgactagatcaaaagttatttcaCTTTCTGCATTATTATTTCTTACTT
TGCAAGGCGTCTGATCACTTTATATACTTTGCAGCTTTTTCATGTAAACa
tgatttttcaaatctttaaatTAATAGTAAAGCAATgagaatttctttta
aatttgaaatttttacaaatttttactttaatatTAATACctgaaattaa
agaaaaaagtttgaaaaattcttagttTGAACTTTGAGATATCATTAAAT
TTGATCACGTGATAGATTTCAGGAAAGGTAGGCAAACCCAAAGGTAGGTA
AACCTTATCTCAAAATAATCTGCAGTTTATGTCATGatgataaaatttta
gagtcaaCCAACGAAAAATTATAGCATATCTTATAGCATGATATTTTATC
ACAGCTTGATTCAAAAGTTGAAACcttttttatccccactgtagaaattt
tttaagtaaggcaagtacttttttattttctggtttacggacatttaGAG
ATGATCTTTTGGaccggaggatggaaaaaaaataaaaataaaattgtcgt
tttcaaactttaatgttGTGTTGGAAAGAATAAAATGTGTTTTGAGGAAA
CTTGCATACaccagaaaatcaaagaaagtttttcagctAGAAAATTTTGT
TGAGCGCCATTGGATGAGGCATATTGGGAAAAAGAGATTGCTGTATCCTA
TTTTCTTCCTTTCCTGCTCTTATAAAAtgaagttttctaaaaaaaatcca
TTTCATGGCAGATCAAACAGAGTCGGAagtgcaaaaataaataaaatttc
tgtgaatttcaattctatttttattttatttttgcaaaataatcgTCGGC
gattccgtaaaccagaaaataaaaaagtaattgcctaagGGTAACTATTT
TAATCCCAGTTCATGTAAAGTTAAAAGAATTTAGTATGTAGTAAAGAAAA
GGAATTCTGAATTTAAAAGCGTCATCATGAATTTGATTATAATTAGTACA
CTGTTTGATCTAACAGGTCGGACAGTTGGGTAGAGTGACTCGGACTCCAA
TCGTTGTTTTAGCTTACACTGCAGATGGcaatatcaaaagttatggtgaG
ATTTATCTTAGTTTTCTTGTGTATTTAGCGAAGAGATATAAACACTAGAA
AGAAATTTAGTCAAATTGTAAATGAGCTGAAATTAgtattataaaaaaca
cttgCCAATCGTGCCAATAAGGTTCCACCTAAAACCTACTTCCAAGCAAT
AAGGAAGGGAATGACTCAAAAGGTTTCAGTTCGAATTCCGACTCGATCAG
AAGGTATGGGACCTAGAGAAAAACCCTGTAAAACAATATTAAAAATTTCA
CATTTCACATGAGGAAAGGCAAGACAGAAAATTGACTGTCTAAACTTGGG
CTTATTAAAGCCTTTCCCAtccaaaattatctttccaaggAGGAAAGATC
TTTTATTGTATTTTGAATTATACCGTTTTTCCTTAGAAATCAATGTATTA
CTGTATGCGGCACTTTATTTTTTAAGGTTGTTGATATTTAGTCAAGATAA
Gtcattgtagaaaaaaaaagaaaaacgtgaagggtatttttgttaattat
gtGTATTTACGGTTATTTATATTTATGGTTGTTGATATTTTATATAATGG
CTTTTTCAAGGTTCATCAAAAGGAATGAAGGAATTTGCTCAAGACccagc
aataattcaaaaattcaaagattCTCTTCCAANACAgcactgataaatga
aaactaaattttacttgttttaatatttatgtttacaaatcttttgcttt
ttatatttgatttaatagtaagataagagatattttgaatttagctgaac
agcccccagagtctcagtcagatcatctaggctccccccaacaatctagg
tccccccaaatattttggtaattttagcccccaggctctttaaaggccaa
aatatttcttagcccccccccaaaaataagggggggggctgaacctatga
cggttcccgtcgtcgcaaacgttGGTTAAGGTTTTGCTTGCCCATCGAAA
GCCCTTAAACTATAGGCGAGGGATGGGTTAAGGTAAGATGAAAgcaaaga
gaaaaacaaaacaattctcTTTGTATTTTGTGATATGTATGCCAATTAAT
TCAAAAACTAAAggatttgtataaaaaataacATAACGATCTAATTTAAA
TTACGAAGGGTGCCCTTATACCTAGCAAGAAGCCTCAATTTTCAAGGAGA
GGGGCTCATTGTTCGCGAGTCATGCCGTCCAATATGTTAACTTAACGTGT
TGATAACTTAAGACTGGTGAAATTACTCCCAATCCAATCTAACCCAACAT
GCATTTGATCCAACTTAGAATGATTTTGCATGAAATGCTGGATTCATTTG
CACTGGCCTTTAGCGTGTTCGTAAAAATATGCGAAATCGTGCAACGAAAA
GAGTGCCACACCCctatatttgaaactttgtgaagTCGTGGCACTTTTTT
CATAAAGTTGACGTCAGAACTTTCTTTCGTTTTAAAATGGGAGTGTAGGG
GAATCTTCTAATGTGCGTTTTCTTTTTTCCCTTGTCAAACTTAACTCGAG
ACTTTTCATCTCCAATTAAATAtattgaagatgaaaagtttACTCCCTTC
AAGAAACGCTGAGCTTGCAAAGAGATTGCAGTTATTCAACCAACGATCAA
AACAAAAGAGAGCGCGCGGCGTAACTTTAGTTGTTCGATTCAACACCGCA
ATTTCTTCACtttaataaaacaatttaaTGGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038691-exon-sc0001911-1491911889:17888..18081 | TCONS_00038691-exon-sc0001911-1491911889:17888..18081 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1510915933:17888..18081 | TCONS_00038691-exon-sc0001911-1510915933:17888..18081 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1575043694:17888..18081 | TCONS_00038691-exon-sc0001911-1575043694:17888..18081 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1491911889:18232..18303 | TCONS_00038691-exon-sc0001911-1491911889:18232..18303 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1510915933:18232..18303 | TCONS_00038691-exon-sc0001911-1510915933:18232..18303 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1575043694:18232..18303 | TCONS_00038691-exon-sc0001911-1575043694:18232..18303 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1491911889:20098..21222 | TCONS_00038691-exon-sc0001911-1491911889:20098..21222 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1510915933:20098..21222 | TCONS_00038691-exon-sc0001911-1510915933:20098..21222 | Clytia hemisphaerica | exon |
| TCONS_00038691-exon-sc0001911-1575043694:20098..21222 | TCONS_00038691-exon-sc0001911-1575043694:20098..21222 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001911 | supercontig | sc0001911:17888..21222 + |
Blast
The following BLAST results are available for this feature:
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