TCONS_00038690 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038690
Unique NameTCONS_00038690
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038690 ID=TCONS_00038690|Name=TCONS_00038690|organism=Clytia hemisphaerica|type=transcript|length=939bp
GAAAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAG
ACATCTATCTTGAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGA
GAAAAATAGATCTACTGatggttttgaaagttttgatgaTGCGGTTGCTA
GAACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGT
GATCATGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTATA
CGATAAGttttcctcGTTTCTTTTTGGGTCGATTTTAAACTTGACGCAAC
TGGCAAGAGACTTCAATCTCAAAAACTCGTCAGGCGAATATCCGTGTAAT
GGGGGACAAGTCGTCCGAAAATTCTTAGAGGAAGTACACCACATTGATTT
AGGACAATACAAACTCGTCCATAGCGGAACACGTGTTcgtaaagcaaaaa
agagGATGACGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATG
GAACTAAAGAAGCATCTTGAACTATAATTCAACTCGGATTTTCAGCATGC
CCACAATCGCACCCACGACTAATTAAAGAGCAAATCGTTGGCGTTCGCTT
CGATTTTTCTTTCCGCGCCTTTTCTTCCCCAAGATGGTAGACGAAACGGT
GGGCAAGTAACGCTGGCCACCGACCACTGACTACCCTGGACCGTACAATC
AGCAATATACCCTGGACTTGGTTGATGGTTGGCTCTATTTTGGTgcattt
gtttatgtttgtaaATCTGTCCTTGTTTTGATCATCTAGTCGTCAAGATT
TGGGATACCAACAAAAACAGACTGGTCGGTATAAACTATAAATAACTGGG
ttatttaatttgttgttataTGTGTGACGATATGATGAAATGTGCACCTA
CAGTAATTCCATCCAGCTCATCATCAGGATCCTCTCCTC
Run BLAST on NCBI

protein sequence of TCONS_00038690-protein

>TCONS_00038690-protein ID=TCONS_00038690-protein|Name=TCONS_00038690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=174bp
KIQRETKKDIEVQWKETSILSAFGGTTSIKTREKNRSTDGFESFDDAVAR
TAKDNEKIARGLKRKRDHVGHLENYTCDWDNLYDKFSSFLFGSILNLTQL
ARDFNLKNSSGEYPCNGGQVVRKFLEEVHHIDLGQYKLVHSGTRVRKAKK
RMTKSDVPIPVKESTMELKKHLEL
Run BLAST on NCBI

transcript from alignment at sc0001911:13507..16026+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038690 ID=TCONS_00038690|Name=TCONS_00038690|organism=Clytia hemisphaerica|type=transcript|length=2520bp|location=Sequence derived from alignment at sc0001911:13507..16026+ (Clytia hemisphaerica)
GAAAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAG
ACATCTATCTTGAGGTTTGGAAGCAGTTGTATATACCTTTACAAGCCAGA
GCAGGGGGTCAACATTCAGGGTATTAAAGCATAGCTTGTGGGATGCGGTT
CATATTTGCAAATAATTAAAGCGACTGTAAGTAAGTAAATTTACTTATTG
GGTGGTAACAtcttaattaaatttttttgatgggTGGGTTAACTTAACTA
GAAAGCCAAAAGAATTAGGTGAGTGCCTTTTTTGTTGAAGAAAGTTATCT
ACTCTGGCTATCATCTAGTACCCTGAGATTTGACTTCCTGGCAAGAGCCA
ATAAACAACAGTACAGTCTTAGATCCACTTGTTCTTGTCAACTCGTAGCT
TGAAATTAACTTAAGGTTCCAGCTCTGTCTTGTTGGTTTATATTTATATA
TGATGTACTATGcacaattttttacatttttgtctAGATTAACACGAATT
AGATTATAGGTATTTTAAAACATTAACAATTAACTCAGTTAACATTGAAA
CATTAAATCAGATATGTTCTTTTGCACTAGAAACCATTGATCAAAGATTA
GTTCATAACCAAAATAACTTTGAAGTTAACTTTATTTCATGCTCTCATTT
AGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGAGAAAAATAGATC
TACTGatggttttgaaagttttgatgaTGCGGTTGCTAGAACGGCCAAAG
ATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGG
CATTTGGAGAATTATACATGTGATTGGGATAACTTATACGATAAGGTATT
ACTTATATGATATGATAAGATGTTACTCGAAGGTCTATAATAACCCCCCG
GCCCCAACCCTTTgttaattttcaagtttttcccaTCCCCCATACCTTAT
TAGGACTCCTatgttcattaatttttgaaaataattttgagcTGTCAAAA
GAAGGGTCCCTTTTGATTTCTCTCCTCTGGTTTTAAGTCTTTAGAGTCCT
CAACAGTTTTTTAAAGACTGTTCAAGCTCAAAAATATgtggtaaattttt
ttaataattttcaagaACCTGCCAAGAGACCATGGGCTCATTCACttgaa
gggacataacagtacttgcgaaatttgtacacaaactgtatgcagcggga
tacaaaatcaaaccaaatatggctaattttgattgttcaattgttttaca
agtttgttttggacacgtgattttaattgttttctttaatgacacgtggt
tcgcgcaatgtttacatttaactactttaatgtcccttcaACTCACTCAA
AATACAGATCTTGCGAAGAATTTACTGATACcctctcttttttttctttt
ttttagttttcctcGTTTCTTTTTGGGTCGATTTTAAACTTGACGCAACT
GGCAAGAGACTTCAATCTCAAAAACTCGTCAGGTAGAGATTTTGATTGGT
TATAATCATAAGTTTGACcttttttgtttcacttttgATGCTCGTTCGAC
TGGTACAAATTTATTAATTTGGTTACTAGGGTAACCAATGACCATTTTTG
CAGTAGGCTAGGGCAAGCCTTTGATCtcataattattttttaaatctctG
TATGGAATCTTATGCTCACATTAAATTTATAATTCTCATTTATGTAGGCG
AATATCCGTGTAATGGGGGACAAGTCGTCCGAAAATTCTTAGAGGAAGTA
CACCACATTGATTTAGGACAATACAAACTCGTCCATAGCGGAACACGTGT
TcgtaaagcaaaaaagaggttTTAAAACTAACATTTTACTTCATTTTGAA
TTGGTCTAACGTGggcttttgtttttaatatgtCTTACTAATTTTCTCAG
AGTTTCTGTTGTTAATTTAAATTTActtcattttataattttcttgCAGT
ATATATTTCCTACTTATATTGTACAAAAGCCTAACTCTTCCCCAGTCAAG
ACGGTATACTTACTGTTATCGTGTTGTTGTTTTAGGATGACGAAATCAGA
TGTTCCCATTCCTGTTAAAGAATCGACAATGGAACTAAAGAAGCATCTTG
AACTATAATTCAACTCGGATTTTCAGCATGCCCACAATCGCACCCACGAC
TAATTAAAGAGCAAATCGTTGGCGTTCGCTTCGATTTTTCTTTCCGCGCC
TTTTCTTCCCCAAGATGGTAGACGAAACGGTGGGCAAGTAACGCTGGCCA
CCGACCACTGACTACCCTGGACCGTACAATCAGCAATATACCCTGGACTT
GGTTGATGGTTGGCTCTATTTTGGTgcatttgtttatgtttgtaaATCTG
TCCTTGTTTTGATCATCTAGTCGTCAAGATTTGGGATACCAACAAAAACA
GACTGGTCGGTATAAACTATAAATAACTGGGttatttaatttgttgttat
aTGTGTGACGATATGATGAAATGTGCACCTACAGTAATTCCATCCAGCTC
ATCATCAGGATCCTCTCCTC

Coding sequence (CDS) from alignment at sc0001911:13507..16026+

>TCONS_00038690 ID=TCONS_00038690|Name=TCONS_00038690|organism=Clytia hemisphaerica|type=CDS|length=2625bp|location=Sequence derived from alignment at sc0001911:13507..16026+ (Clytia hemisphaerica)
AAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAGAC
ATCTATCTTGAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGAGA
AAAATAGATCTACTGatggttttgaaagttttgatgaTGCGGTTGCTAGA
ACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGA
TCATGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTATACG
ATAAGttttcctcGTTTCTTTTTGGGTCGATTTTAAACTTGACGCAACTG
GCAAGAGACTTCAATCTCAAAAACTCGTCAGGCGAATATCCGTGTAATGG
GGGACAAGTCGTCCGAAAATTCTTAGAGGAAGTACACCACATTGATTTAG
GACAATACAAACTCGTCCATAGCGGAACACGTGTTcgtaaagcaaaaaag
agGATGACGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATGGA
ACTAAAGAAGCATCTTGAACTATAAAAGATTCAAAGGGAGACAAAGAAAG
ATATAGAAGTTCAATGGAAGGAGACATCTATCTTGAGTGCTTTTGGTGGA
ACAACATCAATTAAAACGCGAGAGAAAAATAGATCTACTGatggttttga
aagttttgatgaTGCGGTTGCTAGAACGGCCAAAGATAATGAAAAGATAG
CAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGGCATTTGGAGAATTAT
ACATGTGATTGGGATAACTTATACGATAAGttttcctcGTTTCTTTTTGG
GTCGATTTTAAACTTGACGCAACTGGCAAGAGACTTCAATCTCAAAAACT
CGTCAGGCGAATATCCGTGTAATGGGGGACAAGTCGTCCGAAAATTCTTA
GAGGAAGTACACCACATTGATTTAGGACAATACAAACTCGTCCATAGCGG
AACACGTGTTcgtaaagcaaaaaagagGATGACGAAATCAGATGTTCCCA
TTCCTGTTAAAGAATCGACAATGGAACTAAAGAAGCATCTTGAACTATAA
AAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAGAC
ATCTATCTTGAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGAGA
AAAATAGATCTACTGatggttttgaaagttttgatgaTGCGGTTGCTAGA
ACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGA
TCATGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTATACG
ATAAGttttcctcGTTTCTTTTTGGGTCGATTTTAAACTTGACGCAACTG
GCAAGAGACTTCAATCTCAAAAACTCGTCAGGCGAATATCCGTGTAATGG
GGGACAAGTCGTCCGAAAATTCTTAGAGGAAGTACACCACATTGATTTAG
GACAATACAAACTCGTCCATAGCGGAACACGTGTTcgtaaagcaaaaaag
agGATGACGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATGGA
ACTAAAGAAGCATCTTGAACTATAAAAGATTCAAAGGGAGACAAAGAAAG
ATATAGAAGTTCAATGGAAGGAGACATCTATCTTGAGTGCTTTTGGTGGA
ACAACATCAATTAAAACGCGAGAGAAAAATAGATCTACTGatggttttga
aagttttgatgaTGCGGTTGCTAGAACGGCCAAAGATAATGAAAAGATAG
CAAGAGGATTGAAGAGAAAGCGTGATCATGTGGGGCATTTGGAGAATTAT
ACATGTGATTGGGATAACTTATACGATAAGttttcctcGTTTCTTTTTGG
GTCGATTTTAAACTTGACGCAACTGGCAAGAGACTTCAATCTCAAAAACT
CGTCAGGCGAATATCCGTGTAATGGGGGACAAGTCGTCCGAAAATTCTTA
GAGGAAGTACACCACATTGATTTAGGACAATACAAACTCGTCCATAGCGG
AACACGTGTTcgtaaagcaaaaaagagGATGACGAAATCAGATGTTCCCA
TTCCTGTTAAAGAATCGACAATGGAACTAAAGAAGCATCTTGAACTATAA
AAGATTCAAAGGGAGACAAAGAAAGATATAGAAGTTCAATGGAAGGAGAC
ATCTATCTTGAGTGCTTTTGGTGGAACAACATCAATTAAAACGCGAGAGA
AAAATAGATCTACTGatggttttgaaagttttgatgaTGCGGTTGCTAGA
ACGGCCAAAGATAATGAAAAGATAGCAAGAGGATTGAAGAGAAAGCGTGA
TCATGTGGGGCATTTGGAGAATTATACATGTGATTGGGATAACTTATACG
ATAAGttttcctcGTTTCTTTTTGGGTCGATTTTAAACTTGACGCAACTG
GCAAGAGACTTCAATCTCAAAAACTCGTCAGGCGAATATCCGTGTAATGG
GGGACAAGTCGTCCGAAAATTCTTAGAGGAAGTACACCACATTGATTTAG
GACAATACAAACTCGTCCATAGCGGAACACGTGTTcgtaaagcaaaaaag
agGATGACGAAATCAGATGTTCCCATTCCTGTTAAAGAATCGACAATGGA
ACTAAAGAAGCATCTTGAACTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023224XLOC_023224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038690-exon-sc0001911-1491911889:13507..13570TCONS_00038690-exon-sc0001911-1491911889:13507..13570Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1510915933:13507..13570TCONS_00038690-exon-sc0001911-1510915933:13507..13570Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1575043694:13507..13570TCONS_00038690-exon-sc0001911-1575043694:13507..13570Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1491911889:14159..14351TCONS_00038690-exon-sc0001911-1491911889:14159..14351Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1510915933:14159..14351TCONS_00038690-exon-sc0001911-1510915933:14159..14351Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1575043694:14159..14351TCONS_00038690-exon-sc0001911-1575043694:14159..14351Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1491911889:14913..14988TCONS_00038690-exon-sc0001911-1491911889:14913..14988Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1510915933:14913..14988TCONS_00038690-exon-sc0001911-1510915933:14913..14988Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1575043694:14913..14988TCONS_00038690-exon-sc0001911-1575043694:14913..14988Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1491911889:15204..15324TCONS_00038690-exon-sc0001911-1491911889:15204..15324Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1510915933:15204..15324TCONS_00038690-exon-sc0001911-1510915933:15204..15324Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1575043694:15204..15324TCONS_00038690-exon-sc0001911-1575043694:15204..15324Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1491911889:15542..16026TCONS_00038690-exon-sc0001911-1491911889:15542..16026Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1510915933:15542..16026TCONS_00038690-exon-sc0001911-1510915933:15542..16026Clytia hemisphaericaexon
TCONS_00038690-exon-sc0001911-1575043694:15542..16026TCONS_00038690-exon-sc0001911-1575043694:15542..16026Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038690-proteinTCONS_00038690-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001911supercontigsc0001911:13507..16026 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.055027	0.0538353	0.497594	0.18641	0.497316	0.477396	0.318814	0.369674	0.211201	0.353048	0.285446	0.474495	0.259557	0.23195	0.182418	0.214945	0.0516625	0	0.0939778	0.0687586	0	0.101321	0	0.0967906	0	0	0	0.109916
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038690 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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