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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038689 ID=TCONS_00038689|Name=TCONS_00038689|organism=Clytia hemisphaerica|type=transcript|length=1010bp
NNaaaaattatgttttaatggtgtattaatttttgtttcGGTTTGGCCag
aaatataataaaattgttCCCATTTTTGCGAGCCCCTTGCGTAACACCCA
AAATTAGGTAAAACCTAATTCCAAATAGAAATGTTAAATATCACACAATC
AAACATCTGTTAGAGTTCATACCAGTCATATTGAAAGCTTTTTATCCATA
TggcttcttcttcttccaccTTGTTCCAAGCAACTGAACTTTAGCATTCT
CTTAAAGTATGTAAATAAAATGATAACCTGGGACAATATAAAGCTATGTC
AGCCTCCCCAATGCTCCCAATCCTCCAATCGACCAGCGAAAATCCccttg
gccaacatctcccAATACAAACGACAATCCccttggccaacatctcccAA
TACCAACGACAATCCccttggccaacatctcccAATACCAGCgacaatca
ccttggccaacatctcccAATACCAACGACAATCCCCTTGGCCATCATCT
CCAAAAACCAGCGACAATCACCTAGGCCCAACATCTCATCACCACCCATC
TCCTTTGCCAAATTTAGTTGCAGATATTGTTATATACTTGATAATATCTT
GATGGTTTGTTTCATacagtttttccaaaaaaaaagtacTGTTTGAATGT
TGTCTCCTTTCGTTTCGTTTGCTACGAAAATTGTACGCTTCACTGCACAA
ACTACATTTATATCCATGAATGTGCATACTCTATATCTCTGTACGTTTAG
TAACACTGATAGTTATGGACCTGCCTTGAGAGATATTGGAagattcaaca
acaacaaaaaaaataattttcactgTAAGATGAGCTTCTTTGCGAATGGA
AGATCAGTGATCGAAGTCATAGCTCTAAACCACCTATAGATTCTACCGAA
AGGAGCAAATGCGACGGGGGCGTACTATGGGCGGACGGCCTACCAAAGCC
ACTCTAGCTAGATACGCAAAAGGGGGTGGCGtcgtaacaaaataaaagtt
aaactaaaac Run BLAST on NCBI protein sequence of TCONS_00038689-protein >TCONS_00038689-protein ID=TCONS_00038689-protein|Name=TCONS_00038689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSASPMLPILQSTSENPLGQHLPIQTTIPLANISQYQRQSPWPTSPNTSD
NHLGQHLPIPTTIPLAIISKNQRQSPRPNISSPPISFAKFSCRYCYILDN
ILMVCFIQFFQKKSTV Run BLAST on NCBI transcript from alignment at sc0001910:2407..3416 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038689 ID=TCONS_00038689|Name=TCONS_00038689|organism=Clytia hemisphaerica|type=transcript|length=1010bp|location=Sequence derived from alignment at sc0001910:2407..3416 (Clytia hemisphaerica)
gttttagtttaacttttattttgttacgaCGCCACCCCCTTTTGCGTATC
TAGCTAGAGTGGCTTTGGTAGGCCGTCCGCCCATAGTACGCCCCCGTCGC
ATTTGCTCCTTTCGGTAGAATCTATAGGTGGTTTAGAGCTATGACTTCGA
TCACTGATCTTCCATTCGCAAAGAAGCTCATCTTAcagtgaaaattattt
tttttgttgttgttgaatctTCCAATATCTCTCAAGGCAGGTCCATAACT
ATCAGTGTTACTAAACGTACAGAGATATAGAGTATGCACATTCATGGATA
TAAATGTAGTTTGTGCAGTGAAGCGTACAATTTTCGTAGCAAACGAAACG
AAAGGAGACAACATTCAAACAgtactttttttttggaaaaactgtATGAA
ACAAACCATCAAGATATTATCAAGTATATAACAATATCTGCAACTAAATT
TGGCAAAGGAGATGGGTGGTGATGAGATGTTGGGCCTAGGTGATTGTCGC
TGGTTTTTGGAGATGATGGCCAAGGGGATTGTCGTTGGTATTgggagatg
ttggccaaggtgattgtcGCTGGTATTgggagatgttggccaaggGGATT
GTCGTTGGTATTgggagatgttggccaaggGGATTGTCGTTTGTATTggg
agatgttggccaaggGGATTTTCGCTGGTCGATTGGAGGATTGGGAGCAT
TGGGGAGGCTGACATAGCTTTATATTGTCCCAGGTTATCATTTTATTTAC
ATACTTTAAGAGAATGCTAAAGTTCAGTTGCTTGGAACAAggtggaagaa
gaagaagccATATGGATAAAAAGCTTTCAATATGACTGGTATGAACTCTA
ACAGATGTTTGATTGTGTGATATTTAACATTTCTATTTGGAATTAGGTTT
TACCTAATTTTGGGTGTTACGCAAGGGGCTCGCAAAAATGGGaacaattt
tattatatttctGGCCAAACCgaaacaaaaattaatacaccattaaaaca
taatttttNN Coding sequence (CDS) from alignment at sc0001910:2407..3416 >TCONS_00038689 ID=TCONS_00038689|Name=TCONS_00038689|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0001910:2407..3416 (Clytia hemisphaerica)
TCAAACAgtactttttttttggaaaaactgtATGAAACAAACCATCAAGA
TATTATCAAGTATATAACAATATCTGCAACTAAATTTGGCAAAGGAGATG
GGTGGTGATGAGATGTTGGGCCTAGGTGATTGTCGCTGGTTTTTGGAGAT
GATGGCCAAGGGGATTGTCGTTGGTATTgggagatgttggccaaggtgat
tgtcGCTGGTATTgggagatgttggccaaggGGATTGTCGTTGGTATTgg
gagatgttggccaaggGGATTGTCGTTTGTATTgggagatgttggccaag
gGGATTTTCGCTGGTCGATTGGAGGATTGGGAGCATTGGGGAGGCTGACA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038689-exon-sc0001910-1491911889:2407..3416 | TCONS_00038689-exon-sc0001910-1491911889:2407..3416 | Clytia hemisphaerica | exon |
| TCONS_00038689-exon-sc0001910-1510915933:2407..3416 | TCONS_00038689-exon-sc0001910-1510915933:2407..3416 | Clytia hemisphaerica | exon |
| TCONS_00038689-exon-sc0001910-1575043694:2407..3416 | TCONS_00038689-exon-sc0001910-1575043694:2407..3416 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001910 | supercontig | sc0001910:2407..3416 . |
Blast
The following BLAST results are available for this feature:
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