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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038687 ID=TCONS_00038687|Name=TCONS_00038687|organism=Clytia hemisphaerica|type=transcript|length=916bp
TATTAATTCTTCTGTTCATGTAGACCTTGCAAATAAAGTCACAACAGCAA
GGCTTCCATTCATTTGTGATCCAACCGAAAAGTTGTTACCTAACAAGTCG
ATTGCACTGAAAGTATACCAGCAACAGCTTCGAAAGCTGAACAAGCCAGA
AAATGCTAATGACAAACAAGACATCATCCAATCTGAAGCAAAGCTCCATA
CAATGGGATTTGTGGATTACGTTTCAAATCTTCCACCAGATATCCAAGAG
ATACTACATTTTCAACCGATTCAAAACTACATTCCATGGCGAGCTGTGTG
GAAACCCAGTTCGTTAAGCACACCTTGTAGAATCGTATTTGACGCTTCTC
AGAACACACCTTCCGGTCATAGTCTAAATGATTGCCTTGCAAAGGGACGA
AACGGTTTGAACCATCTTCNAAGCCTTGACATTTCAACCATTGACACTGC
TGATGCCAGCCCATATCTCGCTTGTGTAGCCATCTATGCAAGATTCAAAC
GAAAATGTGGAAGTTATTCATGCCAACTTGTTCTTGGTCGTTCAAGGATC
GTCCATGATCGAATGACACAACCACGTGCAGAGCTTTTCGCAGCAGTCCT
CAATGCACATTCAGGAGAGATTGTACGACGTTCTTTCCACAGTTGGCACA
CCTCATCTCTCAAGCTTTCAGATAGTCAAATTGCTCTCTATTGGCTATCC
AATGACGAGAAACCTTTAAAACAATGGGTTAGAAATCGATCCATTGAAAT
CAGAAGATTTTCCCGACCCGATCAATGGCACTACGTGTCCTCCAAATGTA
TGCCCGCTGACATCGGTACACGAAAAGGAGCAACATTAGATGATGTGAAG
CAAGACTCAACATGGATTCAAGGATTTGATTGGATGAAGATGGATACTTC
ACAATTTCCAATGAAG Run BLAST on NCBI protein sequence of TCONS_00038687-protein >TCONS_00038687-protein ID=TCONS_00038687-protein|Name=TCONS_00038687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp
INSSVHVDLANKVTTARLPFICDPTEKLLPNKSIALKVYQQQLRKLNKPE
NANDKQDIIQSEAKLHTMGFVDYVSNLPPDIQEILHFQPIQNYIPWRAVW
KPSSLSTPCRIVFDASQNTPSGHSLNDCLAKGRNGLNHLXSLDISTIDTA
DASPYLACVAIYARFKRKCGSYSCQLVLGRSRIVHDRMTQPRAELFAAVL
NAHSGEIVRRSFHSWHTSSLKLSDSQIALYWLSNDEKPLKQWVRNRSIEI
RRFSRPDQWHYVSSKCMPADIGTRKGATLDDVKQDSTWIQGFDWMKMDTS
QFPMK Run BLAST on NCBI transcript from alignment at sc0001909:3711..4626 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038687 ID=TCONS_00038687|Name=TCONS_00038687|organism=Clytia hemisphaerica|type=transcript|length=916bp|location=Sequence derived from alignment at sc0001909:3711..4626 (Clytia hemisphaerica)
CTTCATTGGAAATTGTGAAGTATCCATCTTCATCCAATCAAATCCTTGAA
TCCATGTTGAGTCTTGCTTCACATCATCTAATGTTGCTCCTTTTCGTGTA
CCGATGTCAGCGGGCATACATTTGGAGGACACGTAGTGCCATTGATCGGG
TCGGGAAAATCTTCTGATTTCAATGGATCGATTTCTAACCCATTGTTTTA
AAGGTTTCTCGTCATTGGATAGCCAATAGAGAGCAATTTGACTATCTGAA
AGCTTGAGAGATGAGGTGTGCCAACTGTGGAAAGAACGTCGTACAATCTC
TCCTGAATGTGCATTGAGGACTGCTGCGAAAAGCTCTGCACGTGGTTGTG
TCATTCGATCATGGACGATCCTTGAACGACCAAGAACAAGTTGGCATGAA
TAACTTCCACATTTTCGTTTGAATCTTGCATAGATGGCTACACAAGCGAG
ATATGGGCTGGCATCAGCAGTGTCAATGGTTGAAATGTCAAGGCTTNGAA
GATGGTTCAAACCGTTTCGTCCCTTTGCAAGGCAATCATTTAGACTATGA
CCGGAAGGTGTGTTCTGAGAAGCGTCAAATACGATTCTACAAGGTGTGCT
TAACGAACTGGGTTTCCACACAGCTCGCCATGGAATGTAGTTTTGAATCG
GTTGAAAATGTAGTATCTCTTGGATATCTGGTGGAAGATTTGAAACGTAA
TCCACAAATCCCATTGTATGGAGCTTTGCTTCAGATTGGATGATGTCTTG
TTTGTCATTAGCATTTTCTGGCTTGTTCAGCTTTCGAAGCTGTTGCTGGT
ATACTTTCAGTGCAATCGACTTGTTAGGTAACAACTTTTCGGTTGGATCA
CAAATGAATGGAAGCCTTGCTGTTGTGACTTTATTTGCAAGGTCTACATG
AACAGAAGAATTAATA Coding sequence (CDS) from alignment at sc0001909:3711..4626 >TCONS_00038687 ID=TCONS_00038687|Name=TCONS_00038687|organism=Clytia hemisphaerica|type=CDS|length=915bp|location=Sequence derived from alignment at sc0001909:3711..4626 (Clytia hemisphaerica)
CTTCATTGGAAATTGTGAAGTATCCATCTTCATCCAATCAAATCCTTGAA
TCCATGTTGAGTCTTGCTTCACATCATCTAATGTTGCTCCTTTTCGTGTA
CCGATGTCAGCGGGCATACATTTGGAGGACACGTAGTGCCATTGATCGGG
TCGGGAAAATCTTCTGATTTCAATGGATCGATTTCTAACCCATTGTTTTA
AAGGTTTCTCGTCATTGGATAGCCAATAGAGAGCAATTTGACTATCTGAA
AGCTTGAGAGATGAGGTGTGCCAACTGTGGAAAGAACGTCGTACAATCTC
TCCTGAATGTGCATTGAGGACTGCTGCGAAAAGCTCTGCACGTGGTTGTG
TCATTCGATCATGGACGATCCTTGAACGACCAAGAACAAGTTGGCATGAA
TAACTTCCACATTTTCGTTTGAATCTTGCATAGATGGCTACACAAGCGAG
ATATGGGCTGGCATCAGCAGTGTCAATGGTTGAAATGTCAAGGCTTNGAA
GATGGTTCAAACCGTTTCGTCCCTTTGCAAGGCAATCATTTAGACTATGA
CCGGAAGGTGTGTTCTGAGAAGCGTCAAATACGATTCTACAAGGTGTGCT
TAACGAACTGGGTTTCCACACAGCTCGCCATGGAATGTAGTTTTGAATCG
GTTGAAAATGTAGTATCTCTTGGATATCTGGTGGAAGATTTGAAACGTAA
TCCACAAATCCCATTGTATGGAGCTTTGCTTCAGATTGGATGATGTCTTG
TTTGTCATTAGCATTTTCTGGCTTGTTCAGCTTTCGAAGCTGTTGCTGGT
ATACTTTCAGTGCAATCGACTTGTTAGGTAACAACTTTTCGGTTGGATCA
CAAATGAATGGAAGCCTTGCTGTTGTGACTTTATTTGCAAGGTCTACATG
AACAGAAGAATTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038687-exon-sc0001909-1491911889:3711..4626 | TCONS_00038687-exon-sc0001909-1491911889:3711..4626 | Clytia hemisphaerica | exon |
| TCONS_00038687-exon-sc0001909-1510915933:3711..4626 | TCONS_00038687-exon-sc0001909-1510915933:3711..4626 | Clytia hemisphaerica | exon |
| TCONS_00038687-exon-sc0001909-1575043694:3711..4626 | TCONS_00038687-exon-sc0001909-1575043694:3711..4626 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001909 | supercontig | sc0001909:3711..4626 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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