TCONS_00038685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038685
Unique NameTCONS_00038685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1069

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038685 ID=TCONS_00038685|Name=TCONS_00038685|organism=Clytia hemisphaerica|type=transcript|length=1069bp
AATTGCAATGGCTCACCAAAACTTTTAGCTTCAGCATCATTCAACTATGG
ATTTGGTTTCATTCTGTGGAATATCGATAACGAGTATTGCTACCGTGTTC
GTGATGCACGGAAGAGTTTACCAGGGTTGATAGCTCCAGTAACTCAACTC
CATGCATGGTGGCATTTCTTCGCTGGAGTTGGAACCTTCCTCACTATTGT
TTATATAATACATTTGCGTTTGACGTGTCTGGGAGTAAACCCTTTTCTAC
AGtttttacatGGATTCTTCCCATACTATTCACAAAAAGTTGGCAGATCA
TACGAGGAAACCAAATTTCAACAAGACATTAATGGGAATACCGTGCCGTC
CGTCAAACTAAAAAACGGACGTTCGAATAATAGCGTTGGAAATTTTGCTC
GATTACTTTAAAAGTTCTTCTACGATTTTTACGATGAGATGgttcaaaat
caactttctcgcccgaactccaaatttcgaaaaacgaggaaataagctaa
attctcaatagatttcgaccatgattgtacattGAAAAATGTTCCAATTC
CCCACTTTTTGGAGATTGACAATGGAGTTAAACTACTATGTGGACATTTT
CAAATGGAATAAATTGTGTATTCTTTAATTTTCGAATTGaaccttctttt
tttatattactttatttattaacttttatttgatatatattatttgaaac
ttttttgtttattttgaaaataaattgtaaATACTATTTTGAACTATTTA
GCCAtccatatatttctttttttttaatgtagcTTTGTGTTCTCTGACCC
CAGGGAACCACGTCAATCGTCACAAATTTCAGCTCGGTGATTTGTGCCTA
TATGAAGTGTTTATCGGCTTGCCTTTGTCTAGAATATGTTAGAATATGTT
TAAATGAAATCTTTCAATTGTGAATATTATTGACTAAATTTGTGGAATAT
TTTGATTCAGGTTTAAAGGAAACCTTCTGTAAATAAATGATCAAACTGAA
TATTTTTTACGCCATAGGACTATCACGTTTCAAACTAGAAAGAACATTTA
AATTTTCGTGAACAAAATG
Run BLAST on NCBI

transcript from alignment at sc0001909:26319..29618+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038685 ID=TCONS_00038685|Name=TCONS_00038685|organism=Clytia hemisphaerica|type=transcript|length=3300bp|location=Sequence derived from alignment at sc0001909:26319..29618+ (Clytia hemisphaerica)
AATTGCAATGGCTCACCAAAACTTTTAGCTTCAGCATCATTCAAGTAAGT
TTCTATCTTGTTAATTACAGAGTGCTTTATTTGAGAAATGTTATCTAGAC
ATTATAATTTTAGTAAATGGAGAAActtttttctccaaaacttAACGTTT
CTTGCTGTTTCAAATTTCTTGCTGTTTCAAAAATGACAAACTATAGAATG
CGTTGGTTTCAATCgacaaaaattgacttcattttAGTCTTTAGTGTCGA
AAAAAGGCGAGGTGTCTATTGATATGTCGACATTTAATACATcatctaaa
gtctgtctcgaaataatttgcagctggagacaaaaatggctgtaactttt
gatagagttcgaatcaagttgcgattaagtgcttgttaaaatgatattcg
tgagtggaatattatcaagtaaaaaaattgagaaaaaaaaggaagatgaa
aaatgaagaagaaaaaaatcaattttttgtagaaatgtggtataattact
attttcacaggagtgattcttcaatcttagatcatcatcactgtcaaaaa
aattttcaaaaatattcattcaatcaaaagatatcaaagaaNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAaagaaagtttattgctggttgactctataaaat
agtaaaaactggtaaaaaacgacaaaaaaacagccttttgtcgatcaacc
agcaataaactttgcaTCATCAGTCATTTCGTCCTACACCGTTTATGTCG
AGTGTATGGTATACACTATATATAAAAAGAATGTTTATCGATAAAGCTGT
GTTGGTCACCTAGTAACCCCTTTTTCTGGAATTTTCATTCTAGCTATGGA
TTTGGTTTCATTCTGTGGAATATCGATAACGAGTATTGCTACCGTGTTCG
GTAAGTTGAGTTTTGTTCCTTTTTGATCCCTTCCTCTCATTTCAATCATG
CGACTAAGGGAAGAGTTGGCTTGACATATTATGTTAATTGGGTAAAAAAT
GGATGGTGATGGATTCCCTTTGTACAAGCTCGATAAAGAGACGATAAAGT
TGTTaaatgttatgcttataaaaacaggAATCAACGACATTCAATCATTT
ATGTTTTTTGAGTAGTTGCGAATTTCCTTTGTTCAAGATCAGTATTCGAT
AAAGATTCTATTGTTCTTAGATGATAAAGTCACGTTACGTTACGTgtgat
gcttataaaaacatgtacaaCATCAACCACATCTTTTGCTAAATACTGCA
CCTTCAATCCCTGTGGCACGGCCACTTTATCTTCTTCATCCCTCTTTTAT
AGTGATGCACGGAAGAGTTTACCAGGGTTGATAGCTCCAGTAACTCAACT
CCATGCATGGTGGCATTTCTTCGCTGGAGTTGGAACCTTCCTCACTATTG
TTTATATGTAAGTATGATGCTGTTAAGTACAAATATTCTTCattgaattt
tcattaaaaatcaaaagtaaataGCCAACAGGATGCTGATAAATCCAAGC
TTTCATTATTCtcgaattttcgaatttttattgaaaatcaaaagtaaTAA
ACAACAGGTACTGGTAGATATAGATATCCACTTCCCTACCGTTGTCTTTC
TAAACTTCTAGGAGTTTTAAGAAagtatgttttttttaattctgctCTAA
TTTGTTTTCAGAATACATTTGCGTTTGACGTGTCTGGGAGTAAACCCTTT
TCTACAGGTAAGTTATGAATAGAATtaacgattttcaaaaaaggcttttt
tgatgtattattagctttttggctttttttgataagaattaaaatataga
aatatgTCTATAACTGCCTATAATGCGTCTAACTCGGAATTTTGAATAAC
GTATCAAttcgaaaaatgaaatataaaagTTCTTTTCGAGTTACATAACT
CGAACAGCCTATGCGCGAAGGCCAAAAGTAGTGTTGCCTTGTTTTTTGGT
TtagaaaacttcttttttttttttttttagtttttacatGGATTCTTCCC
ATACTATTCACAAAAAGTTGGCAGATCATACGAGGAAACCAAATTTCAAC
AAGACATTAATGGGAATACCGTGCCGTCCGTCAAACTAAAAAACGGACGT
TCGAATAATAGCGTTGGAAATTTTGCTCGATTACTTTAAAAGTTCTTCTA
CGATTTTTACGATGGTAACATAACTTTAGTTTAGCGCTTCTTATCTTTCA
CTCGAAGTGTTTTCGCTGATCCAATCAACTTTAATCCATTTCAAAAATGA
ACGGGTTTTACTCAATTGGCTGCAGCCAAAGCAATTTCATATTTGATCAA
ATCATGGTTCTCAGTTACAATCAtagtcgtaatatttgagaaaaaaggga
aatccaccgggaagttttgaaaccacaatcgctttgtaagtgctctaaaa
gtaggttggaagggtagagctTTAACTCTGAgatttaacatgagacttaa
gacttaagaccttgcgatctgaggatccaaaagttcaaaaatggtccaat
aaggctcataatatagcctggaggtctataaacccgagccaaattgaaat
atccgattaaattttAGAGATGgttcaaaatcaactttctcgcccgaact
ccaaatttcgaaaaacgaggaaataagctaaattctcaatagatttcgac
catgattgtacattGAAAAATGTTCCAATTCCCCACTTTTTGGAGATTGA
CAATGGAGTTAAACTACTATGTGGACATTTTCAAATGGAATAAATTGTGT
ATTCTTTAATTTTCGAATTGaaccttctttttttatattactttatttat
taacttttatttgatatatattatttgaaacttttttgtttattttgaaa
ataaattgtaaATACTATTTTGAACTATTTAGCCAtccatatatttcttt
ttttttaatgtagcTTTGTGTTCTCTGACCCCAGGGAACCACGTCAATCG
TCACAAATTTCAGCTCGGTGATTTGTGCCTATATGAAGTGTTTATCGGCT
TGCCTTTGTCTAGAATATGTTAGAATATGTTTAAATGAAATCTTTCAATT
GTGAATATTATTGACTAAATTTGTGGAATATTTTGATTCAGGTTTAAAGG
AAACCTTCTGTAAATAAATGATCAAACTGAATATTTTTTACGCCATAGGA
CTATCACGTTTCAAACTAGAAAGAACATTTAAATTTTCGTGAACAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023219XLOC_023219Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038685-exon-sc0001909-1491911889:26319..26362TCONS_00038685-exon-sc0001909-1491911889:26319..26362Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:26319..26362TCONS_00038685-exon-sc0001909-1510915933:26319..26362Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:26319..26362TCONS_00038685-exon-sc0001909-1575043694:26319..26362Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1491911889:27262..27318TCONS_00038685-exon-sc0001909-1491911889:27262..27318Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:27262..27318TCONS_00038685-exon-sc0001909-1510915933:27262..27318Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:27262..27318TCONS_00038685-exon-sc0001909-1575043694:27262..27318Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1491911889:27721..27825TCONS_00038685-exon-sc0001909-1491911889:27721..27825Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:27721..27825TCONS_00038685-exon-sc0001909-1510915933:27721..27825Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:27721..27825TCONS_00038685-exon-sc0001909-1575043694:27721..27825Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1491911889:28080..28125TCONS_00038685-exon-sc0001909-1491911889:28080..28125Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:28080..28125TCONS_00038685-exon-sc0001909-1510915933:28080..28125Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:28080..28125TCONS_00038685-exon-sc0001909-1575043694:28080..28125Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1491911889:28399..28582TCONS_00038685-exon-sc0001909-1491911889:28399..28582Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:28399..28582TCONS_00038685-exon-sc0001909-1510915933:28399..28582Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:28399..28582TCONS_00038685-exon-sc0001909-1575043694:28399..28582Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1491911889:28986..29618TCONS_00038685-exon-sc0001909-1491911889:28986..29618Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1510915933:28986..29618TCONS_00038685-exon-sc0001909-1510915933:28986..29618Clytia hemisphaericaexon
TCONS_00038685-exon-sc0001909-1575043694:28986..29618TCONS_00038685-exon-sc0001909-1575043694:28986..29618Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001909supercontigsc0001909:26319..29618 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.18549	0.654347	0	0.340608	0	0	0	0	0.227672	0	0	0	0	0	0	0	1.1268	4.81875	0.0499326	1.21914	0	0	0	0.10658	0	0.88084
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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