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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038684 ID=TCONS_00038684|Name=TCONS_00038684|organism=Clytia hemisphaerica|type=transcript|length=1510bp
NTTTGAAGAATCCCCTTATATTTCTGTGGAGTTATGGCGTGTTGGCTGCC
GCCTTGTTTATACTCAACATACGTGGTTGTCTCTATGGATTTGGTTTCAT
TCTGTGGAATATCGATAACGAGTATTGCTACCGTGTTCGTGATGCACGGA
AGAGTTTACCAGGGTTGATAGCTCCAGTAACTCAACTCCATGCATGGTGG
CATTTCTTCGCTGGAGTTGGAACCTTCCTCACTATTGTTTATATAATACA
TTTGCGTTTGACGTGTCTGGGAGTAAACCCTTTTCTACAGtttttacatG
GATTCTTCCCATACTATTCACAAAAAGTTGGCAGATCATACGAGGAAACC
AAATTTCAACAAGACATTAATGGGAATACCGTGCCGTCCGTCAAACTAAA
AAACGGACGTTCGAATAATAGCGTTGGAAATTTTGCTCGATTACTTTAAA
AGTTCTTCTACGATTTTTACGATGGTAACATAACTTTAGTTTAGCGCTTC
TTATCTTTCACTCGAAGTGTTTTCGCTGATCCAATCAACTTTAATCCATT
TCAAAAATGAACGGGTTTTACTCAATTGGCTGCAGCCAAAGCAATTTCAT
ATTTGATCAAATCATGGTTCTCAGTTACAATCAtagtcgtaatatttgag
aaaaaagggaaatccaccgggaagttttgaaaccacaatcgctttgtaag
tgctctaaaagtaggttggaagggtagagctTTAACTCTGAgatttaaca
tgagacttaagacttaagaccttgcgatctgaggatccaaaagttcaaaa
atggtccaataaggctcataatatagcctggaggtctataaacccgagcc
aaattgaaatatccgattaaattttAGAGATGgttcaaaatcaactttct
cgcccgaactccaaatttcgaaaaacgaggaaataagctaaattctcaat
agatttcgaccatgattgtacattGAAAAATGTTCCAATTCCCCACTTTT
TGGAGATTGACAATGGAGTTAAACTACTATGTGGACATTTTCAAATGGAA
TAAATTGTGTATTCTTTAATTTTCGAATTGaaccttctttttttatatta
ctttatttattaacttttatttgatatatattatttgaaacttttttgtt
tattttgaaaataaattgtaaATACTATTTTGAACTATTTAGCCAtccat
atatttctttttttttaatgtagcTTTGTGTTCTCTGACCCCAGGGAACC
ACGTCAATCGTCACAAATTTCAGCTCGGTGATTTGTGCCTATATGAAGTG
TTTATCGGCTTGCCTTTGTCTAGAATATGTTAGAATATGTTTAAATGAAA
TCTTTCAATTGTGAATATTATTGACTAAATTTGTGGAATATTTTGATTCA
GGTTTAAAGGAAACCTTCTGTAAATAAATGATCAAACTGAATATTTTTTA
CGCCATAGGACTATCACGTTTCAAACTAGAAAGAACATTTAAATTTTCGT
GAACAAAATG Run BLAST on NCBI transcript from alignment at sc0001909:25223..29618+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038684 ID=TCONS_00038684|Name=TCONS_00038684|organism=Clytia hemisphaerica|type=transcript|length=4396bp|location=Sequence derived from alignment at sc0001909:25223..29618+ (Clytia hemisphaerica)
NTTTGAAGAATCCCCTTATATTTCTGGTAAGTGTTCCCAATTCGTTATGC
TTTCTTAAACCGATTCAGTTTTATCCTTTCACGGCCGACCCTTCTCTGTT
AAAAGTAACAATCTCCTTTATTTGTTCGCAATTTTCGAAAGCTTGCTTTT
ACACATGcaagttttttttgaagtttaccTAAGTTTTCTTGGAGAATAAT
CTGAAATTGTTGTGTGTAAAAGAGCCCTTAAATCAAACAACTCGTGCatc
cttttcatttttgatgttttctttctttgtagTGGAGTTATGGCGTGTTG
GCTGCCGCCTTGTTTATACTCAACATACGTGGTTGTCTGTAAGTGTTCTT
TGTTAAAAGTTCTGTTTTCGATGGATTTCCGTTTCAAAATTATGCAtgat
tcaccaaaatttcaagaattgtACTATTTTGCTTTGATCACTGGAGTGAT
GATTGAAGctctttttttaaaacttttttgaacttttttgatACCAAGCC
CTTAGaacttttttgaacttttttgataccaagcctttagaactttttta
gaacttttttgaTACCAAGCCCTTAgaactttttttaacttttttgatac
CAAGCCCTTAGAActgttttgaacttttttgaTACCAAGCCCTTAGAAct
gttttgaacttttttgaTACCAAGCCCTTAGAactattttgaactttttt
gatACCAAGCCCTTAGaacttttttgaacttttttgatACCAAGCCCTTA
GAActgttttgaacttttttgaTACCAAGCCCTTAGaacttttttgaact
tttttgatACCAAGCCCTTAGAActgttttgaacttttttgaTACCAAGC
CCTTAGaacttttttgaacttttttgatACCAAGCCCTTAGAActgtttt
gaacttttttgaTACCAAGCCCTTAGaacttttttgaacttttttgatAC
CAAGCCCTTAGAACTTTGAAAAAGGAGCAAACTGGGCATTATAAAACTCT
TGAAGTGAGATTTTTTCGTTAATAATATTGAAGGCAATTGATTTTGATTC
CCCTCTGTATTCGGCAACTTCTTCAACTTCGTATTTACTTTTCAGAAATT
GCAATGGCTCACCAAAACTTTTAGCTTCAGCATCATTCAAGTAAGTTTCT
ATCTTGTTAATTACAGAGTGCTTTATTTGAGAAATGTTATCTAGACATTA
TAATTTTAGTAAATGGAGAAActtttttctccaaaacttAACGTTTCTTG
CTGTTTCAAATTTCTTGCTGTTTCAAAAATGACAAACTATAGAATGCGTT
GGTTTCAATCgacaaaaattgacttcattttAGTCTTTAGTGTCGAAAAA
AGGCGAGGTGTCTATTGATATGTCGACATTTAATACATcatctaaagtct
gtctcgaaataatttgcagctggagacaaaaatggctgtaacttttgata
gagttcgaatcaagttgcgattaagtgcttgttaaaatgatattcgtgag
tggaatattatcaagtaaaaaaattgagaaaaaaaaggaagatgaaaaat
gaagaagaaaaaaatcaattttttgtagaaatgtggtataattactattt
tcacaggagtgattcttcaatcttagatcatcatcactgtcaaaaaaatt
ttcaaaaatattcattcaatcaaaagatatcaaagaaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAaagaaagtttattgctggttgactctataaaatagta
aaaactggtaaaaaacgacaaaaaaacagccttttgtcgatcaaccagca
ataaactttgcaTCATCAGTCATTTCGTCCTACACCGTTTATGTCGAGTG
TATGGTATACACTATATATAAAAAGAATGTTTATCGATAAAGCTGTGTTG
GTCACCTAGTAACCCCTTTTTCTGGAATTTTCATTCTAGCTATGGATTTG
GTTTCATTCTGTGGAATATCGATAACGAGTATTGCTACCGTGTTCGGTAA
GTTGAGTTTTGTTCCTTTTTGATCCCTTCCTCTCATTTCAATCATGCGAC
TAAGGGAAGAGTTGGCTTGACATATTATGTTAATTGGGTAAAAAATGGAT
GGTGATGGATTCCCTTTGTACAAGCTCGATAAAGAGACGATAAAGTTGTT
aaatgttatgcttataaaaacaggAATCAACGACATTCAATCATTTATGT
TTTTTGAGTAGTTGCGAATTTCCTTTGTTCAAGATCAGTATTCGATAAAG
ATTCTATTGTTCTTAGATGATAAAGTCACGTTACGTTACGTgtgatgctt
ataaaaacatgtacaaCATCAACCACATCTTTTGCTAAATACTGCACCTT
CAATCCCTGTGGCACGGCCACTTTATCTTCTTCATCCCTCTTTTATAGTG
ATGCACGGAAGAGTTTACCAGGGTTGATAGCTCCAGTAACTCAACTCCAT
GCATGGTGGCATTTCTTCGCTGGAGTTGGAACCTTCCTCACTATTGTTTA
TATGTAAGTATGATGCTGTTAAGTACAAATATTCTTCattgaattttcat
taaaaatcaaaagtaaataGCCAACAGGATGCTGATAAATCCAAGCTTTC
ATTATTCtcgaattttcgaatttttattgaaaatcaaaagtaaTAAACAA
CAGGTACTGGTAGATATAGATATCCACTTCCCTACCGTTGTCTTTCTAAA
CTTCTAGGAGTTTTAAGAAagtatgttttttttaattctgctCTAATTTG
TTTTCAGAATACATTTGCGTTTGACGTGTCTGGGAGTAAACCCTTTTCTA
CAGGTAAGTTATGAATAGAATtaacgattttcaaaaaaggcttttttgat
gtattattagctttttggctttttttgataagaattaaaatatagaaata
tgTCTATAACTGCCTATAATGCGTCTAACTCGGAATTTTGAATAACGTAT
CAAttcgaaaaatgaaatataaaagTTCTTTTCGAGTTACATAACTCGAA
CAGCCTATGCGCGAAGGCCAAAAGTAGTGTTGCCTTGTTTTTTGGTTtag
aaaacttcttttttttttttttttagtttttacatGGATTCTTCCCATAC
TATTCACAAAAAGTTGGCAGATCATACGAGGAAACCAAATTTCAACAAGA
CATTAATGGGAATACCGTGCCGTCCGTCAAACTAAAAAACGGACGTTCGA
ATAATAGCGTTGGAAATTTTGCTCGATTACTTTAAAAGTTCTTCTACGAT
TTTTACGATGGTAACATAACTTTAGTTTAGCGCTTCTTATCTTTCACTCG
AAGTGTTTTCGCTGATCCAATCAACTTTAATCCATTTCAAAAATGAACGG
GTTTTACTCAATTGGCTGCAGCCAAAGCAATTTCATATTTGATCAAATCA
TGGTTCTCAGTTACAATCAtagtcgtaatatttgagaaaaaagggaaatc
caccgggaagttttgaaaccacaatcgctttgtaagtgctctaaaagtag
gttggaagggtagagctTTAACTCTGAgatttaacatgagacttaagact
taagaccttgcgatctgaggatccaaaagttcaaaaatggtccaataagg
ctcataatatagcctggaggtctataaacccgagccaaattgaaatatcc
gattaaattttAGAGATGgttcaaaatcaactttctcgcccgaactccaa
atttcgaaaaacgaggaaataagctaaattctcaatagatttcgaccatg
attgtacattGAAAAATGTTCCAATTCCCCACTTTTTGGAGATTGACAAT
GGAGTTAAACTACTATGTGGACATTTTCAAATGGAATAAATTGTGTATTC
TTTAATTTTCGAATTGaaccttctttttttatattactttatttattaac
ttttatttgatatatattatttgaaacttttttgtttattttgaaaataa
attgtaaATACTATTTTGAACTATTTAGCCAtccatatatttcttttttt
ttaatgtagcTTTGTGTTCTCTGACCCCAGGGAACCACGTCAATCGTCAC
AAATTTCAGCTCGGTGATTTGTGCCTATATGAAGTGTTTATCGGCTTGCC
TTTGTCTAGAATATGTTAGAATATGTTTAAATGAAATCTTTCAATTGTGA
ATATTATTGACTAAATTTGTGGAATATTTTGATTCAGGTTTAAAGGAAAC
CTTCTGTAAATAAATGATCAAACTGAATATTTTTTACGCCATAGGACTAT
CACGTTTCAAACTAGAAAGAACATTTAAATTTTCGTGAACAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038684-exon-sc0001909-1491911889:25223..25248 | TCONS_00038684-exon-sc0001909-1491911889:25223..25248 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:25223..25248 | TCONS_00038684-exon-sc0001909-1510915933:25223..25248 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:25223..25248 | TCONS_00038684-exon-sc0001909-1575043694:25223..25248 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1491911889:25505..25560 | TCONS_00038684-exon-sc0001909-1491911889:25505..25560 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:25505..25560 | TCONS_00038684-exon-sc0001909-1510915933:25505..25560 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:25505..25560 | TCONS_00038684-exon-sc0001909-1575043694:25505..25560 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1491911889:27262..27318 | TCONS_00038684-exon-sc0001909-1491911889:27262..27318 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:27262..27318 | TCONS_00038684-exon-sc0001909-1510915933:27262..27318 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:27262..27318 | TCONS_00038684-exon-sc0001909-1575043694:27262..27318 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1491911889:27721..27825 | TCONS_00038684-exon-sc0001909-1491911889:27721..27825 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:27721..27825 | TCONS_00038684-exon-sc0001909-1510915933:27721..27825 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:27721..27825 | TCONS_00038684-exon-sc0001909-1575043694:27721..27825 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1491911889:28080..28125 | TCONS_00038684-exon-sc0001909-1491911889:28080..28125 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:28080..28125 | TCONS_00038684-exon-sc0001909-1510915933:28080..28125 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:28080..28125 | TCONS_00038684-exon-sc0001909-1575043694:28080..28125 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1491911889:28399..29618 | TCONS_00038684-exon-sc0001909-1491911889:28399..29618 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1510915933:28399..29618 | TCONS_00038684-exon-sc0001909-1510915933:28399..29618 | Clytia hemisphaerica | exon |
| TCONS_00038684-exon-sc0001909-1575043694:28399..29618 | TCONS_00038684-exon-sc0001909-1575043694:28399..29618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001909 | supercontig | sc0001909:25223..29618 + |
Blast
The following BLAST results are available for this feature:
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