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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038682 ID=TCONS_00038682|Name=TCONS_00038682|organism=Clytia hemisphaerica|type=transcript|length=2165bpRun BLAST on NCBI protein sequence of TCONS_00038682-protein >TCONS_00038682-protein ID=TCONS_00038682-protein|Name=TCONS_00038682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=305bp MSPPMYRDSSSGYWGFPSSTMDWCEENYAVTSYVAEFWNTVSNVVFVVPPRun BLAST on NCBI transcript from alignment at sc0001909:20212..29618+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00038682 ID=TCONS_00038682|Name=TCONS_00038682|organism=Clytia hemisphaerica|type=transcript|length=9407bp|location=Sequence derived from alignment at sc0001909:20212..29618+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001909:20212..29618+ >TCONS_00038682 ID=TCONS_00038682|Name=TCONS_00038682|organism=Clytia hemisphaerica|type=CDS|length=11016bp|location=Sequence derived from alignment at sc0001909:20212..29618+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00038682 vs. Swiss-Prot (Human)
Match: ACER3 (Alkaline ceramidase 3 OS=Homo sapiens GN=ACER3 PE=1 SV=3) HSP 1 Score: 187.578 bits (475), Expect = 1.496e-53 Identity = 111/261 (42.53%), Postives = 155/261 (59.39%), Query Frame = 1
Query: 187 MSPPMYRDSSSGYWGFPSSTMDWCEENYAVTSYVAEFWNTVSNVVFVVPPLLTAYHLWKHKLSELGPIVCFLLLTVVGFGSFAFHCTLLYHSQLLDELPMIYGTCAMLYCIIEIRSPKDSVNKXXXXXXXXXXXXXXXXXXXXKNPLIFLWSYGVLAAALFILNIRGCLNCNGSPKLLASASFN-YGFGFILWNIDNEYCYRVRDARKSLPGLIAPVTQLHAWWHFFAGVGTFLTIVYIIHLRLTCLGVNPFLQFLHGFFP 966
M+P R+ GYWG +ST+DWCEENY+VT Y+AEFWNTVSN++ ++PP+ A + L E I +L LTVVG GS+ FH TL Y QLLDELPMIY C +YC+ E K+SVN L+ L+ SL +T +Y +K P+ YG+L L + +I + L S + GF+ WNIDN +C +R+ RK +P +I TQ HAWWH G+G++L I++ ++ R L P ++FL G +P
Sbjct: 1 MAPAADRE---GYWGPTTSTLDWCEENYSVTWYIAEFWNTVSNLIMIIPPMFGAVQSVRDGL-EKRYIASYLALTVVGMGSWCFHMTLKYEMQLLDELPMIYSCCIFVYCMFECFKIKNSVNYHLLFTLVLFSLIVTTVYLKVKEPIFHQVMYGMLVFTLVLRSIYIVTWVYPWLRGLGYTSLGIFLLGFLFWNIDNIFCESLRNFRKKVPPIIGITTQFHAWWHILTGLGSYLHILFSLYTRTLYLRYRPKVKFLFGIWP 257 The following BLAST results are available for this feature:
BLAST of TCONS_00038682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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