TCONS_00038656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038656
Unique NameTCONS_00038656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038656 ID=TCONS_00038656|Name=TCONS_00038656|organism=Clytia hemisphaerica|type=transcript|length=228bp
CATTTCAGTCTTTGGTGTCGTGGAGTTTGAGGGTGAACTTATTCACATGC
CGACATTTCGAGATCAGTTCATTCCTTGAATTTAACAGTTTCTCGGGTTG
GTCGATTGTGGCAATTTCTAATCTTTCGCTAAGGCAGAGTGAACATTTCA
GCGAAGCACGATTGAACGGTGGACATTTACGGACTGTCTTCCAAGTAATC
TTTGGGGCACGATTCTTTCGTTTCAACC
Run BLAST on NCBI

transcript from alignment at sc0001904:18696..18923

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038656 ID=TCONS_00038656|Name=TCONS_00038656|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at sc0001904:18696..18923 (Clytia hemisphaerica)
GGTTGAAACGAAAGAATCGTGCCCCAAAGATTACTTGGAAGACAGTCCGT
AAATGTCCACCGTTCAATCGTGCTTCGCTGAAATGTTCACTCTGCCTTAG
CGAAAGATTAGAAATTGCCACAATCGACCAACCCGAGAAACTGTTAAATT
CAAGGAATGAACTGATCTCGAAATGTCGGCATGTGAATAAGTTCACCCTC
AAACTCCACGACACCAAAGACTGAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023216XLOC_023216Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038656-exon-sc0001904-1491911889:18696..18923TCONS_00038656-exon-sc0001904-1491911889:18696..18923Clytia hemisphaericaexon
TCONS_00038656-exon-sc0001904-1510915933:18696..18923TCONS_00038656-exon-sc0001904-1510915933:18696..18923Clytia hemisphaericaexon
TCONS_00038656-exon-sc0001904-1575043694:18696..18923TCONS_00038656-exon-sc0001904-1575043694:18696..18923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001904supercontigsc0001904:18696..18923 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	2.49559	2.04068	5.64065	0	2.12535	2.37275	1.5186	2.33018	2.57232	0	2.64109	2.60194	0	1.392	3.59342	12.0919	20.554	3.4236	0	43.6827	49.6472	3.87732	13.6786	1.64058	0	11.154	9.83528	11.6642	5.48107
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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