TCONS_00038654 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038654
Unique NameTCONS_00038654
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length403

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038654 ID=TCONS_00038654|Name=TCONS_00038654|organism=Clytia hemisphaerica|type=transcript|length=403bp
ttttttctggaagagcccaatgatcATTTTACGAAGGCAAAAAACGCGTT
CTATATTGTATCCTTTTTCATCTTTGTGAGTCCGACCTAGACTTTTCATA
GGGtgcgccaaaatcaaaatcttctaaaacTGCCTCCCCAGTTTGTCCAA
ATTTTAGACGAGCCACCAACGTAACTGCGTGCGTGCtattgacttcaaat
ttgtaattttataaaatcttaattttagtTAATCATTTCATTGAATTGAA
ATATCATTTTCcccacccctgtctcacagccccggtggaaattTTTCCCA
CAGTTGGGCTGGAAATTTATATCGAAATCCTACCGGGGAAATAAATTATT
TGTTCCTAAGTTGAAAAATCAAGCGAggatagttttggagtgcaattttt
tcc
Run BLAST on NCBI

transcript from alignment at sc0001903:8365..8767

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038654 ID=TCONS_00038654|Name=TCONS_00038654|organism=Clytia hemisphaerica|type=transcript|length=403bp|location=Sequence derived from alignment at sc0001903:8365..8767 (Clytia hemisphaerica)
ggaaaaaattgcactccaaaactatccTCGCTTGATTTTTCAACTTAGGA
ACAAATAATTTATTTCCCCGGTAGGATTTCGATATAAATTTCCAGCCCAA
CTGTGGGAAAaatttccaccggggctgtgagacaggggtgggGAAAATGA
TATTTCAATTCAATGAAATGATTAactaaaattaagattttataaaatta
caaatttgaagtcaataGCACGCACGCAGTTACGTTGGTGGCTCGTCTAA
AATTTGGACAAACTGGGGAGGCAgttttagaagattttgattttggcgca
CCCTATGAAAAGTCTAGGTCGGACTCACAAAGATGAAAAAGGATACAATA
TAGAACGCGTTTTTTGCCTTCGTAAAATgatcattgggctcttccagaaa
aaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023214XLOC_023214Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038654-exon-sc0001903-1491911889:8365..8767TCONS_00038654-exon-sc0001903-1491911889:8365..8767Clytia hemisphaericaexon
TCONS_00038654-exon-sc0001903-1510915933:8365..8767TCONS_00038654-exon-sc0001903-1510915933:8365..8767Clytia hemisphaericaexon
TCONS_00038654-exon-sc0001903-1575043694:8365..8767TCONS_00038654-exon-sc0001903-1575043694:8365..8767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001903supercontigsc0001903:8365..8767 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.182875	0	0	0	0.493234	0.38976	0.705344	0.660334	0.616421	1.14531	1.66749	0.730762	0.608122	0.378924	0.207685	0.222878	0.274567	0	0.194721	1.02101	0.707256	0.776193	0	0	1.17807	1.75233	0.752274	0.535231	0.608931	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038654 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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