TCONS_00038652 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038652
Unique NameTCONS_00038652
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length477

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038652 ID=TCONS_00038652|Name=TCONS_00038652|organism=Clytia hemisphaerica|type=transcript|length=477bp
aaaaaaaactaatggatattataatataaacaaataagTCGTCATATAAC
AACACAATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAATGA
AACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGCGATGT
CCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAGAATATGCTCAA
CAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGGAAAACTAAGgt
accaaaaactcaGTGGTTGAATTCAAAACCCATGGAGACTTCCTTAGAAC
AGTTTTGTCGATCGGGAATTGGTATGATCGGCTGCAAGATGACGCGAGTT
GTTTGACGACTATTAAATCATCTTTTAAGTATGTATTAACAGATCTCGAG
GCTGCATTAAAAGAAGTTGCATTAAATGAACATGAAATTTCACTCGTGGA
AAACTCTTCAAAGTATTTATCAGgtaa
Run BLAST on NCBI

transcript from alignment at sc0001903:14908..26669-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038652 ID=TCONS_00038652|Name=TCONS_00038652|organism=Clytia hemisphaerica|type=transcript|length=11762bp|location=Sequence derived from alignment at sc0001903:14908..26669- (Clytia hemisphaerica)
AAAAAAAACTAATGGATATTATAATATAAACAAATAAGTCGTCATATAAC
AACACAATGGATAGCTCAACTACAAAACCATCCATGGAAGAGGAGAATGA
AACCCAACGCAAAGCCTTCGCTGAAACTCTCAAAGTTGCATTGGTAAGAG
AGAACTTTGATTTTATTTTGCATGTTATTAACAGTGACCCTTATTGATCA
TTCATCCAACGGAAGACGTCTTGTTCATCATCATCTTTCGACCGCGGTCG
AGATGATGGATTCCACCCTCTGGCGCCAAGAATCGCGGTCGCGCATGGCA
GTCTCCAGGTCACTATAAAGAAGTCCNNTCCAGGTCACTATAAAGAAGTC
CAGTGTCCCTGCTAACTGCGTCAGTAAAAGTTAACTTTCTCGATCTTTGA
ACCAGCCGCTTGGGTTTCCAGAGTAAGAAAGAGGAGATGACTTCTGTGGA
TGCACGAAGGCAATGACCAGCAAACTGAACACGTCTAGCCTTTAAGATGT
TTGAGATAGGCTTAATCGAACCATAGATGGTGTTTTTAGTGGGATGATCG
CGCCAGGAAAGATTTTTAACTCTTCTTAGAAGGTGTGTGTATGTTCCATC
GAGTTGTTTTTCTAATATACGTGTGATACACGTTTCCGAACCATAAAGAA
GGATAGGTTCTATGGTGGATTTAAAACTTTAATCTTAAGGTTAGAGTCAA
GAAGAGAAGATGTCCAAATTTTGTGTAGTTTGTTACACGCACTCCAGGCA
AGTGCTTTGCGAATCTTAAAATCTTTTTNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNGTGGGGCAGTACTCAACTAACTCGAG
AGATATCTCCTTAATTCAAGAACTAAGCAGAAGAGGGACAAAAACCAGAT
TAACTATTAGATGCTAACTGCCTAGTGGCCCCTATCACTCTACCTGCAAC
AGAGTGAGATTTAAAAACTGGTTTTCTCCAGCGTCTTGTTACTCTACCCT
GCATTACAAAAGTAACAAAAAGATTTTAAACATCATGCATGGCGTTCTTT
AATTTACCTAGCAAGCATGCAACAACTTCGGTTTTTTGGGGCTCAATTCA
ACATTTCGACGTCTCTTCAAAATTTCAAAATAAAGGAATATTTGGGTGAG
AAAAGAAACACGAAGATAGACGAAAATCAACCATGGCACAAGTTTAGGAA
TTCGGGAGCTTGTTTGTTACTCCTACCTTTTACCTCCTTTTTTAGATTTA
GAATGCCATGGTGAGTTTATGTTGAAAAGCTGTAACCTTTCAATAATTTA
CAGTGAAAAGTTCAACCATAAATTCATCGAAAACGTCAAGATGATTTCTT
CTCGAACATTTTTCCGGTGTGTCTCTTGATGAAGTTGAAATTTCACGCAA
AAAGTCATGGTCAATCGTTCTTATTTTTTCCTGTATCTTGACAATTTCAA
CCAGGGCCTTATTGATTTTATTTCCGAGTCTATCAAATACACATTTTTCC
GGTTAGCCGTTTTGTATGAAAAGTCACCAAAATTTCGAGTAAACAAACCA
TCCTATTTTAGCCAATGAGATGGTTTGTTTAGTCGAAATTTTGGTGACTT
TTTATACGAGGCAGCTAACCGTAAAAAGGTGTATTGTCAACTTTTCCACC
ATAGGCGATGTCCATCATAAGAAGCAAACCAGAGGGTGTGACATCAAAAG
AATATGCTCAACAACTCGCCATCAGACTCAAAGAAACGGACTCATCCTGG
AAAACTAAGGTATATTGATGGTTCAAATATGGAATATAGTACTGGGCGAT
ACAAAAATACTTTGGACGTTTGCAGGGTAATATAACATGCTAGACGACTA
ATTCCGAATTATAGAAAATCAGTATAAAATTAATGCAAGGGACATTGTAG
TTTATACAAACTCATATTGTCCCGTAAAAATTATCATATTATCATATAAT
ACACATATTACTGTATTACACTAATTATAAACGACTCCAGACTCCAGTCT
AGCAGGGTAGCTATACCAAACAAAGTCTATACTGAGCTAAGAATTACATT
CATTGGAAAGAGGATGTCTAGCTTAGCTGCCAAGTAATTGCCAATATAAG
CTATTTCAAAGTTTTCCAAAGGTGTAAAGATACACTGACATAGGGTTATA
GTTCGAGTCGAAATTTAAGTTATAAGACTATCCTCTTTTTGATTAAACTA
CAATCGGCGCTGAAATATATTGTCAATTTTTGGTATTTTAACGTTTTTCA
GAATTTAAAGCTCGGGCAAGAATTGCAGTTTCAGTACTTTCACTTTGTTT
CATTGGATTTTTCTATTTGGGAGGGGTTAATAAGTGGCTTCCAGGCTATA
TTCTCAGCCTTATTGGAACATTTTTTGAACTTTTAGATTCTGAGATCCCA
AGGTCTAAGTCTTAAGTCTAATGTTAAAAGTCAGAGTTAAAACTCTACTT
TCCAACTGTGCTTCAAAGTACTTAAAAATCACTTGTGGTTTTAAAGTTTT
GAAGGGATTCCCCTTTTCTACCAAATATTTCGGTGCCAATTTTGCAAGAT
ATCGTTCGACCTGAGCGAATCATCAAAAGTTTTGTGAGTCACTCGACGTA
CTCTTTCAAATTGGCCTCTGAAAAAGAGCTTTTATGACCATGTTGTAACT
TAAAATTTTAGTATAAAGACATGGAGACAGTGTTGAAGAAAGCTCAACAA
GAAATCGTCATGCTTAGATTAAAGGTATCGTCTAAATCAGATGATCAAAG
ATTGACAGTCGAGCAAATGCAGTCAGATACAGAAAGCAGTAAGTCTGAAA
ATGTAATATAAGAATAATATGGAAAATTGGAATATTAGAGAAATAGCCTG
CACCCCCCCCCTATATTGAAGTGTTGTGTAAAATCCAGGGTGGTCAGTAA
AATGAGGTGGAAAATCCAGGGGGTCACCTTTACCAAAAAAGATCTCCTCA
AAATAGGGGGTACAAGTTTTTTCCGGAATAGCCCATTTCGATCAGCCGGA
TATACTTTTCAGTTGTTGCACCCTAAAGCCTTATCCGGGTCATCAATGAC
GGATTGTTGATGAAACTGATGGTATCATAGTTTTTGAGGAACGGCCGTTT
GAAGTTTTGACCCCTGACCTATCCCTGGCAAGTGGTCCATATTTTGAAAA
ATTGAGGAACATCTATAGAGGGTATTAATTAATATTTTTGATAGGTGGAA
GGGGATATACCTACATGAAAAGATTTTCCCTTCATGCTTTCAGAGTTTTG
CCTGGCAGATCGCATTTTGATCACCGATGTTTAATACTCTTAATGATCAA
TAGCAATCATCTATTTCGTTTAGGTACCAAAAACTCAGTGGTTGAATTCA
AAACCCATGGAGACTTCCTTAGAACAGGTTAGAGAGCTAGATGCATCCCT
TTTCCAAAATAATTTTGTTATCAATCTCTGCATCACAGGACATAATAGCG
AGTTTATGTATGTGTGTTTTTCTGCAACGGAAACGGTAAGGTTCTAACTT
GACTAGATCCAGACCAGCTGAGACGACGGTAAATCAGCACTTTTACCGTC
CTCGGTTTTGCGGGTCAGAATTGCGGGTTATTCCAAATCGCTTCAGACAC
TCTACCGTGCTCAAAAGTGCAAATACATGTTAACTCGCTAATGTAGTATA
TTACTCTAAAACATTAGGCTATTCATGATATGCACCACTGGAGAGTCTTC
TGAGATTTTTAAATTTTCCACCCAATACGTCACTTAAACAATAGAAAAAG
TGACGTATTGGGTGGAACAAAAACAGAAAAGTTGCATAATTTCGTGAAGT
CGTTGCAGTGGTGCATATCTATCACTCCCAATCTAATTACTCCAAAGAAG
GTCAAAATCTCCAGTGCTGGAAAAATTATGGCAATATCAATCATGATAAT
AACAGAAGTGAGTCACGAGAGCCAAAAAAATTCTTGCTGAAATCGATAAG
TAGGAATCTAAGTTTCTCGGAGTTTAGTCAGACAAAACTTGAAGTTGATA
GCACAACTAGAGCTTTTTTTGGACCACCCTGTATTAATTATACTATAATG
TCAAATATCCTCTATATTTTTATTAAAATTAAACCGAATCTTCTTGATGA
CGTTATTGAAAATTTGGCGTGATGGCGTGAATTAAGCTGGACGCAGCTCT
CACCTCTCCCAGAGGAAGTGGTAAATAACCTCAACAATGATACTCGAGTA
AAATTTCCAATAGTGTGAACAGCAGCAACGTCATTTTACAAGCAAAAGAT
GCCTTCTAGCTTAAAAAATCACCAGGATCCTGCCTTGACAAAAATCGCTA
TCTTTGTTTATGTTTTGCAAGTGTGCAAAAGTGAAAGTAGCAGCAACGAC
AGAAAAAAACAGTGAATTGATAATATGCGAGTTGCGAGTTGGTCCTGCGA
GTTGCGAGTTGCTATCAAATATGCGAGTTGCGAGTTGGTTTTTGCGAGTT
GCGAGTTACGAGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNAATAAAAGTGCGAGTTACGAGTTGAAAATTTCACGTTAAGACATC
AAAATCGCGAGTTGCAGATTAAAATCACGAGTTGCAGATTAAAATCGCGA
GTTGAAAATTAAAATCGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAAT
TAAAATTGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTAAAATCGC
GAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTAAAATCGCGAGTTGAAA
AGTCAAAAGTGCGAGTTGAAAAATCAAAAGTGCGAGTTGAAAATTAAAAT
CGCGAGTTGCAGATTAAAATCGCGAGTTGAAAATTGAAATCGCGAGTTGC
AAATTAAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATTAAAAT
CGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATTAAAATCGCTAGTTGA
AAATTGAAATCGCGAGTTGCAAATTAAAATCGCGAGTTGCAAATTAAAAT
CGCGAGTTGCAAATTAAAATTAACAGTTGAAATGAAAATTTGCTTTCGTC
CTTTCTTAATTATATGAATTTCGCATTTTTGCAATTTGATTATTATATTG
TCTTTATTTTGCAGACATACGGTATATTTTGAGGGTAAAGAAATATTTTT
TTAGACCATCAAGCGTCTGGTTTTCTGAGTTACGATAGTAAATAGTGCTT
ATCCATATGAAATAATGCGCACGCGTGCGGGGTTTAAAAAGCAGCATGGC
ACAGCACAGGGCGGGGGTTTATTCGTGAGTGTACGTGTGTGTTGATAGCT
TAATAGGTTAAGCAGCGTCCAGCGCGGAATTCGAAGGTTAACTACTGGTT
TTTCCAGAAAAAAGTCCAAACTCCCACTGTTGAGAGGAAGTCAACGCCAC
TCTATTTTTTTCGGTTCAAAAAAAAATTATTTTTCCCGGTATTTTGATTT
TATTACGGGTAAACACTCAACTTTTTCAAACATTCTTTTATTAAGGCCCG
ATCTACACGACACTTTCGAATGTTCGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGAATGTTCGAATGTTTTCATTTCGTCA
TTTCGAATGTTTTCGTAATTCGAAAAGTAAGTGGCTTTATAAAAATCGAA
CGCTCAAAACGTTCGAAACCAGAGGGGGGCGGGTTATATTCTCTTAATTT
ACTATGGATTGCTCCACGTTTTGGTCTATTCGAAAAACCACAAGCGATTA
TTCAATCAAAAGTGTTCGGATAAACACGGTGTCAAATTCATTATATAAGT
GTAGTCGGTCAGTGTGTAAAACGGGAAACAATAATTACAAGGTCTCAAAA
GAAGGTTGTCTAATGCTAATTCCGGTATTTTAAATTTTCCGGGGGTTTTG
TTGTTTGGAATTGCTTAGGTCAGGATTGCTAGTAACGGCTTGTCACTGTG
CCGGGTGCATACTCGGCGCGCAGTGTTGCTAGTAACGGCTCGAATTTCAG
TCAGGTTAAAAAAGGGGCAATTTATTTACTCGTATTATAATAACATTACT
CCCGTCTTTTTTGTCATTCTATATAAGTATTTTCAAATTTTATATTTTGC
TGTGCGAGTGTGGCTCAATGGATAGTGTGCTGGGTTTCTGTTCAGAAGCT
CTTTCATTTGGTGGGTTCGAACCATTGAGTTTCAAGCCCGAAGGGCTAGA
GGTCAATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTAAAATAT
GCGCCGTATTTTTGNAATTTAGCTCCTGGATTTTTTGAACAGATTGTCCG
CTGGAAAATTGTATGTGTTTTTCTTTAAAATGTGCTCCTGGATTTTAAAA
ACAGATGTCTTTAAGGCGACCCCTGGATTTTACCTGTGTGTTTTGAGAAA
AGTCTCTCCTAGATTTATCCATAATATTTTCTCTCCTGGAAAAAATAACA
GATATTTCAAAAAAATCTGCCGGCGGCTGCTCTTGTCCTACCAAGGAGAT
TGACCTCTAGCCTTCGGCTTGAAACTCAATGGTTCGAACCCCGGTCGGGT
CGATAATTCAAGGTCAGTTAAAACACTCTAGAATAGTCAGAAAACATAGT
AAATGAGTTGGAAAAGTCACCAGGGGGTCAGAAAGAAGCCTCAGAGAAGA
TAGGCAGAAATGAAAAGTCGATGTCGGAATGAGCAATAGACAACCTTCGT
TTGAGACCTTGTAATTGGGATTCTCAAAGTAGCGCAAGGACATGACAGAA
CGAATGAGAGCTATCGGGCCAATGCTCACAAATGAACGAGAACAACTATT
ATTTCCAATCTAGGATTTTCTTTCTTTATTCTGAATCGTAAATATTTATT
TTACCAGCTACTATATGAAATTTTAAGATTCGAATTACACGAGTTTCACA
GTATAAATAGTTTTCTATCAGCTTTTATGCTTCCAATACAAAACTTGTCT
CCAATTTTGAACCTAGACATGTCGCCCTAACAACAAAATTCTCCACACTG
GTTGAAACTCACACATTAAAATTTGCAACTCGCGATTTTAAATTTCAACT
CGCACTTTTGATTTTTCAACTCGCACTTTTGATTTTCCAACTCGCGATTT
TAATTTTCAACTCGCGATTTTAATTTGCAACTCGCGATTTTAATTTGCAA
CTCGCGATTTTAATTTGCAACTCGCGATTTTTATGTCTTAACGTGAAATT
TTCAACTCGCAACTCGCACTTTTATTTGTTTAAAAAAGCAACTCGTAACT
CGCAACTCGCAAAAAGCAACTCGCAACTCGCATATTTGATAGCAACTCGC
AACTCGTAGGACCAACTCGCAACTCGTTTGTTAAAAATCCACAAAAAACA
GACATCTCGCACTTGATTGGATATTCAAACTCGATATAATTTTAGTAACA
CTTTTACTTCTTTTAAAAACGTGTATATTAAAAAAAAAAATGACAAAAAC
AGAACCAAAGTTTTACTAAAATTAATTTTCAATTGATATAATTCACGAGG
TAAATGCTTCTTTTCGCTGGCTAAACAGGTGCCATTCTTCAATTCAGAGC
AAATGTGGTTGTGATGTCTTATGAGACTGATGAGACCGAAAAAATGGTGT
GATCAGGGTGTAATGGTCGAGAGGTTTTTCTCTTCTACCGTCCCTTCATT
TTCTTTTCTAGTTTTGTCGATCGGGAATTGGTATGATCGGCTGCAAGATG
ACGCGAGTTGTTTGACGACTATTAAATCATCTTTTAAGTATGTATTAACA
GGTGAGTTCGCTGTTTACTGCATTACAATTTTTTATAGCCTTCCAGGTTT
ATAAACTTTTTCATTTTGTCAAATGGTTTATTCATTACTCAACATTGTTA
ACCGGTTACTTTTTCGAAGCGGGCTACACAGCTTTTTGCGCAATGCAATT
GGTTCTTTTCGCATGACGACGGGCCTACATTGTCCAGAGTTGNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAAAGC
GCTAAAAATCAATCAAAGTTGAAGGAAACGGTTAACAAATACAATAATGA
CCGGTTTTTTTCGGGCTGTACTGAAAATATTACCCTCGGTCAACGTAACA
ACCTCGCAAGCTCGGTCGTTACTTGACCTCGGGCAATATTTCTCAGTACA
GCCCGCACTAACCGGTCATTATTGTATTAGTAAAATTACTAATTAGCAGA
TACTCCAAAAACTGGGAAACTTCAAGAGCGAAATTCAGATTCAGACAATT
ATGTTCACATACTGTGATTCCTGATTCCGATCAAAAATTTAAGAAACAAA
ACTGACAAGAATGAGTCAGTAGCCATCCTTGATTCAAAATGTTGATGCTA
ATACTATGTATTTCTTGTAAATTTCAGATCTCGAGGCTGCATTAAAAGAA
GTTGCATTAAATGAACATGAAATTTCACTCGTGGAAAACTCTTCAAAGTA
TTTATCAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023213XLOC_023213Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038652-exon-sc0001903-1575043694:26527..26669TCONS_00038652-exon-sc0001903-1575043694:26527..26669Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1575043694:22661..22765TCONS_00038652-exon-sc0001903-1575043694:22661..22765Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1575043694:21043..21096TCONS_00038652-exon-sc0001903-1575043694:21043..21096Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1575043694:16569..16658TCONS_00038652-exon-sc0001903-1575043694:16569..16658Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1575043694:14908..14992TCONS_00038652-exon-sc0001903-1575043694:14908..14992Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1510915933:26527..26669TCONS_00038652-exon-sc0001903-1510915933:26527..26669Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1510915933:22661..22765TCONS_00038652-exon-sc0001903-1510915933:22661..22765Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1510915933:21043..21096TCONS_00038652-exon-sc0001903-1510915933:21043..21096Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1510915933:16569..16658TCONS_00038652-exon-sc0001903-1510915933:16569..16658Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1510915933:14908..14992TCONS_00038652-exon-sc0001903-1510915933:14908..14992Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1491911889:26527..26669TCONS_00038652-exon-sc0001903-1491911889:26527..26669Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1491911889:22661..22765TCONS_00038652-exon-sc0001903-1491911889:22661..22765Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1491911889:21043..21096TCONS_00038652-exon-sc0001903-1491911889:21043..21096Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1491911889:16569..16658TCONS_00038652-exon-sc0001903-1491911889:16569..16658Clytia hemisphaericaexon
TCONS_00038652-exon-sc0001903-1491911889:14908..14992TCONS_00038652-exon-sc0001903-1491911889:14908..14992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001903supercontigsc0001903:14908..26669 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.31654	7.64176	4.49915	3.32326	3.7886	4.20061	4.2306	1.54244	4.17133	2.71304	1.25889	3.48786	1.11948	1.33615	1.59349	2.97927	2.83282	1.04826	1.23496	0.245083	0.957128	2.95862	1.88222	4.80106	0.882578	1.3448	4.99346	0.0444299	1.82218	1.9332
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038652 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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