TCONS_00038622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038622
Unique NameTCONS_00038622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1701

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038622 ID=TCONS_00038622|Name=TCONS_00038622|organism=Clytia hemisphaerica|type=transcript|length=1701bp
GNCTTCGTTCCTAATAACACTTATCAAAGGATACTGgCCATCAGTGATTG
TGGCAGTAATAGCAGTGGTTGTTCAAAATGGTTTGGCACGTGGATGTTTC
TTACTCAGTAAAGAAAATGTCAGTGTTGATAATAGGCGTGGTTTCCACAT
TACGTCATACGTGCTCTTTTATTTCAACGTCTTTATTGGTATTGTGTCAT
GTTTACTACGCCTTGCTTATGGTGCCATCTTGGGTGTAGTCATGTTGTCA
AGGCTACAGAAAAGCACTCTACCAAGATCTTATGAACGAAGAGATCCAGG
TTTCTTAGCATATCTTGGTTTCCTCATGGTTGAGCATCAACACTCGAACC
CTGTCCTTCATTGTTTCGTGCGCATTTTACTTGGACACATCGATAAATCT
CTTCAACAAGATGAGTTCACAGTTGTCAGAGGAGaaaccaaagtCTTACT
GAAAACCTACGGTTCAGCTGACAACGCAGAATGGGGTGCTAACGGGTGCC
CATTATCAATTAATAAATCACGCCAAAGAACCGCTCAAGACGTATCACGT
AGCGCACAGATCCGATGGCATCTTGCCGTAATTCTAATACAAAATCCGTC
GATACGTAGATACCGCGGACATTATATACGTCGTCATATTCCCGTAAAAC
ATCTTACGCGTGCTTTATTTATGCAGTTTAACGCAGGGAAAGAGCTTGAA
GGAGAATCAAATGTTGATATTGATAATGTGAGAGCGGCTGCTATTGGTTA
TCAATATCGCACAGACCTTTATAACAGCGAATCACCAGAACTGACCACAA
GTGAAAAGTTTAAACAATGGTTGCAATTCGAAAAGTTTTGTAAACATCAT
TGTAACGAGACAAGTGACGACGTGGAGCCTGAGGAGAGTCTTCCGGATAC
TTTAAAATATAAAGCGAATgagaattttaagaaatttttacaATTCATGA
AATTTAGGGAAAGATCAACTTCAAATGTATCAAGTAACTCTTCAACAACG
AGAGAACAAAAAGTTGAATCTTTAGATGttcaaaaaatgatcaaaagtgT
AACTGAAGTCAGTATTATTGAtgataatgatgaaaataaagaaacgaatg
ctgaatcagcagataATCCAAATGTTGTCCATGTATCACCGAAGAGAGAG
AAAGGGGAGCAAAGAAACACATGTGAGCTAAATATCGAAATGGAAGAAGT
TCATATAAATGAAGGTGTAGACAAAACcgataaaaagacacaaaataaAC
TCGATGCTTGGGTATGAGGtgctacatatatttttccaatattttttcca
aaattaccAGATTTTATGAACCTTTGAGTGATTCGACTTCAATATTTCTT
AATTGTAGGGCCCTTTCTAATTTATCGTTTTTGTACCccttgagagactt
tcgagggtttaaaaaagggacccttacggctcgcacatacccgacatCCA
TTTTGCCCAAGTACTCCGTCTCGCATATATACCATAAATTCTGCTTTGTT
ATTCTATATTCATTGCCTGGTTTATCCAGACCACTAACATATCTTAAATC
CAGGGTTGTTTATCTTCATGatggattttaatttttgaacaTGCATATTT
AGAgataaaacaaataattttgatagttcttgatatttttcttatccaca
tttttacaaataaataacTCTTATTACTAACGAAATTATTCCAATCCTTT
A
Run BLAST on NCBI

transcript from alignment at sc0001894:18467..23300+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038622 ID=TCONS_00038622|Name=TCONS_00038622|organism=Clytia hemisphaerica|type=transcript|length=4834bp|location=Sequence derived from alignment at sc0001894:18467..23300+ (Clytia hemisphaerica)
GNCTTCGTTCCTAATAACACTTATCAAAGGATACTGGTGAGTTCGAGCAT
TTTTACCCAGCTTTCACATAACGTTCTTTtcacgtttatctaatgttcac
aacgtccatataacgtttgatgaacgttgaaacaacgttatgtgtcTGCT
GGGTTCTACTCAGGTAGTTATgtctcaaaaatatgaaaattaccataatt
ttggAGAGAATCAGCCGGCGAAAAATGAGCAAACTAATGATTTAATAAGA
AGGGCACCATGACGAAGTTACCTTTAGCAAAACtagatttatttgaaaaa
acaagttttgctgacgtcatcaatttttgctTTTGCGGTACCCATGGTAC
CCTTCGTATTAAGTCATTGGTTTGCTCATTTTCTACCGGCTAATGCTTTT
CAAAATTATGGTAATGgttaatttcttttaaatatgtttttgagacaGAC
CTAAGCTACTCAtattcgggggggggggggNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggg
gggggtatttaGGAAAAACAGGTGACTTGTGTGCACGAGTCATAAGGGTA
CCCTTTAATACCTTAGAAGTCCCTCAAAGGGGAGCAAACTCATAATTTAT
GCTCTCAAAGGGTCGCTTTCGAGAATTGTGACCAACCGGAACTCAGCTAA
GAAAGTGAGAactttttttaccgtttttggAACCCTACAAAGGATTTTCC
AAGAGGCTTTAGTCGATTCCAAACAAATTTTCCTTTAGCATACCTGGTAC
CCAATTTTTCTTTGGAAGGACGGGAGAAGTCCTTTAAAACAATATTTACT
CCTGAGATGCCCCTCATAATATAGACTTTtctagaaaaattgaatttttt
ctcttttttttccaggCCATCAGTGATTGTGGCAGTAATAGCAGTGGTTG
TTCAAAATGGTTTGGCACGTGGATGTTTCTTACTCAGTAAAGAAAATGTC
AGTGTTGATAATAGGTGATTTTTAGTTTATAAAGATTCTAAAAAAGCTAG
AGATACATATACTTGGTAAGTACTGAGTATTAGGGCTCACACGGCTTCTC
AAATCTCcttaaatgaaattttgtggaGAGGTTTGTTTTCATAGATAAAA
AAGCTAAGAAATCTcctcaatttttacaaaaatataggaaaatctcctca
aaaattggaaaatttctcCTTAAATCTCCTCAATTCTCCTCAAATCTCGA
ATTTTGAAAGCCTGTGAGAACATTCAGAGATATAAATTGTGAGCCTGTAA
GACTCAAGTATCGGTCTCAATAAACGTGTGCAAATAACCGTACTTTTCAA
ACAAACGCTATTGGTTGAAAGGAAAATCAAGCAAATCCATTGGTCTATCG
TATAATCTGACGTAATGGTTGCCAAACACAGATGACACACATGACATGCA
TCCTAAATATagttatttgttcgaattacagagagattcgaataattGAA
AGCAATTTTAACAGGGTTTTTCTTTGACGAAgactggaaacaagttcgaa
ttatagaagtttgGATAAACATAATCCTTATAAAACAACATTGGTCTGga
aagcttattgttttaactttttgttagctttttctttgttataatcaaaa
gatgaaaaatcgatttgctcagttctTTGATCAAGTTGCCAAGTACTCCT
CTTGAGATTGGTGTaaaagatttaatcacatgatcaaaaagtgagcaaaa
caaactaatttctcaacacaagttcaagtaagaaagaATGGAAAGAAACT
AAAGTCTACCAGActggggttttttatacggactatggtatAAACGAAAG
TTTACCGTAAGGTCCGAAATACTAATTTATCGTCTTTTTATTTTAGGCGT
GGTTTCCACATTACGTCATACGTGCTCTTTTATTTCAACGTCTTTATTGG
TATTGTGTCATGTTTACTACGCCTTGCTTATGGTGCCATCTTGGGTGTAG
TCATGTTGTCAAGGCTACAGAAAAGCACTCTACCAAGATCTTATGAACGA
AGAGATCCAGGTATATTGATAAGAAAGGCTCCGGAAGGCCCCAATAGGAT
GGGATTGACGAAGGCACCCTCCTACCTTGCTCTTTGACTGGTCCCGTCAC
AACATTTAGCTTAGTGAAATAgatttaagaaattttaaacaagattaaag
gttttgtctttaaccctattaaccccaaccttttttgatttttgtagccG
CAGGGAGGGGgtggggtagaatctaccaccctctaTTATTTCTTATCTAG
AAGAGCTATTTTAGcttggttttatgtcatgttccACAATAAAGTCAGAA
AACCTAACCTAGaaaacctatgaccctaaaaaaTTGCAcaaattttcaag
atgtttcaaaattttttctccgagatatacacaaaagaacatcagcgtgg
tagattctacccccttGGGCTAATAGGTTTAAATAAGAGTgcaatctttt
ttatattgaactGATatagatgtggagcaagattatagtgagaaagagga
aaagaaagacattttttgcttatatcagcacaatacaACAATGGGGagac
catagtataagaaagccgcggctttcttatactatggggagacattgtcc
tgatatgaaacatgtgtctgatatgaaacggcaACACGTAAAAAAAAACC
CTTTAATTTACTACTACAATGATACAAGATAAGTCCAATCTTGATTTCAT
CCTTTTTTGGGTTATTTTGATgatataaaagtttttttccaagattttta
cttttctgaTCAATTTTATTTGTATAACTTTTATACAGGTTTCTTAGCAT
ATCTTGGTTTCCTCATGGTTGAGCATCAACACTCGAACCCTGTCCTTCAT
TGTTTCGTGCGCATTTTACTTGGACACATCGATAAATCTCTTCAACAAGA
TGAGTTCACAGTTGTCAGAGGAGGTAAGTAACATATAAATCCCTGTCTTA
caaccccggtggaactttttacCTCAAAGGGGATAGATATTTCTATTGAA
ATACCAATAGAGATAGAatctctattgttccaaggttaaaaaacccaaat
gcaatttctaaacattgaattttgaaaggatgaaatcaaaatcaatttca
cagtgaggctgaaattctatGGTATTTTTCCGCCagtgacaaaatttttg
ccaaattttccagtggggctaggGTTCGAGcgggtttgtgacacaggggt
gtacacATGTTTCACCCAGCATTTTTCACCCGAAAAAAGGTCACCTTTAT
AAACTTACAAACAAACACACTTTACTTTTAAAACTCGCCATTGGATTTGA
CAACGTAGgcttttaaatttcattttgttcATGATGGAAGACATCCAATA
GTTCATCATTTATATTATCCGTATGGTATGTTTCTgtaacaatgtttttt
tttctccaaaaacgagttttaaaaattctttgatTCTTGGTTTCCGAAAA
TTTGGTTTCAGTCAATATGTGTAAAGTAAAGCTAGATATTTTACTCCAAA
AAATTCtacatttttagaaaccaaagtCTTACTGAAAACCTACGGTTCAG
CTGACAACGCAGAATGGGGTGCTAACGGGTGCCCATTATCAATTAATAAA
TCACGCCAAAGAACCGCTCAAGACGTATCACGTAGCGCACAGATCCGATG
GCATCTTGCCGTAATTCTAATACAAAATCCGTCGATACGTAGATACCGCG
GACATTATATACGTCGTCATATTCCCGTAAAACATCTTACGCGTGCTTTA
TTTATGCAGTTTAACGCAGGGAAAGAGCTTGAAGGAGAATCAAATGTTGA
TATTGATAATGTGAGAGCGGCTGCTATTGGTTATCAATATCGCACAGACC
TTTATAACAGCGAATCACCAGAACTGACCACAAGTGAAAAGTTTAAACAA
TGGTTGCAATTCGAAAAGTTTTGTAAACATCATTGTAACGAGACAAGTGA
CGACGTGGAGCCTGAGGAGAGTCTTCCGGATACTTTAAAATATAAAGCGA
ATgagaattttaagaaatttttacaATTCATGAAATTTAGGGAAAGATCA
ACTTCAAATGTATCAAGTAACTCTTCAACAACGAGAGAACAAAAAGTTGA
ATCTTTAGATGttcaaaaaatgatcaaaagtgTAACTGAAGTCAGTATTA
TTGAtgataatgatgaaaataaagaaacgaatgctgaatcagcagataAT
CCAAATGTTGTCCATGTATCACCGAAGAGAGAGAAAGGGGAGCAAAGAAA
CACATGTGAGCTAAATATCGAAATGGAAGAAGTTCATATAAATGAAGGTG
TAGACAAAACcgataaaaagacacaaaataaACTCGATGCTTGGGTATGA
GGtgctacatatatttttccaatattttttccaaaattaccAGATTTTAT
GAACCTTTGAGTGATTCGACTTCAATATTTCTTAATTGTAGGGCCCTTTC
TAATTTATCGTTTTTGTACCccttgagagactttcgagggtttaaaaaag
ggacccttacggctcgcacatacccgacatCCATTTTGCCCAAGTACTCC
GTCTCGCATATATACCATAAATTCTGCTTTGTTATTCTATATTCATTGCC
TGGTTTATCCAGACCACTAACATATCTTAAATCCAGGGTTGTTTATCTTC
ATGatggattttaatttttgaacaTGCATATTTAGAgataaaacaaataa
ttttgatagttcttgatatttttcttatccacatttttacaaataaataa
cTCTTATTACTAACGAAATTATTCCAATCCTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023186XLOC_023186Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038622-exon-sc0001894-1491911889:18467..18502TCONS_00038622-exon-sc0001894-1491911889:18467..18502Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1510915933:18467..18502TCONS_00038622-exon-sc0001894-1510915933:18467..18502Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1575043694:18467..18502TCONS_00038622-exon-sc0001894-1575043694:18467..18502Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1491911889:19382..19480TCONS_00038622-exon-sc0001894-1491911889:19382..19480Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1510915933:19382..19480TCONS_00038622-exon-sc0001894-1510915933:19382..19480Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1575043694:19382..19480TCONS_00038622-exon-sc0001894-1575043694:19382..19480Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1491911889:20363..20526TCONS_00038622-exon-sc0001894-1491911889:20363..20526Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1510915933:20363..20526TCONS_00038622-exon-sc0001894-1510915933:20363..20526Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1575043694:20363..20526TCONS_00038622-exon-sc0001894-1575043694:20363..20526Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1491911889:21305..21439TCONS_00038622-exon-sc0001894-1491911889:21305..21439Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1510915933:21305..21439TCONS_00038622-exon-sc0001894-1510915933:21305..21439Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1575043694:21305..21439TCONS_00038622-exon-sc0001894-1575043694:21305..21439Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1491911889:22034..23300TCONS_00038622-exon-sc0001894-1491911889:22034..23300Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1510915933:22034..23300TCONS_00038622-exon-sc0001894-1510915933:22034..23300Clytia hemisphaericaexon
TCONS_00038622-exon-sc0001894-1575043694:22034..23300TCONS_00038622-exon-sc0001894-1575043694:22034..23300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001894supercontigsc0001894:18467..23300 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.053185	0	0	1.84959	1.30767	1.55433	0.0156386	1.74637	4.09458	3.30141	1.76938	3.23352	1.35001	2.22846	3.0559	1.02868	0.853488	2.18517	2.38373	0.772365	1.32051	1.30705	0.26282	1.01002	0	3.87317	4.98994	1.2696	0.67566
Blast
[Close]
BLAST of TCONS_00038622 vs. Swiss-Prot (Human)
Match: CC180 (Coiled-coil domain-containing protein 180 OS=Homo sapiens GN=CCDC180 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.935e-16
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 2 
Query:  137 RGFHITSYVLFYFNVFIGIVSCLLRLAYGAILGVVMLSRLQKSTLPRSYERRDPGFLAYLGFLMVEHQHSNPVLHCFVRILL-GHIDKSLQQ 409
            + FH  +Y LF++NV +G+ +CL RL    +LG+ +++R+ ++ +   YE  D GF A++G L ++H H NPVL  F  IL+  H +K LQQ
Sbjct:   30 KAFHNFNYFLFFYNVLLGLGACLSRLLISCLLGMWLIARIDRTIMQSGYEGADMGFSAWIGMLYMDHYHINPVLVSFCHILITNHREKKLQQ 121
The following BLAST results are available for this feature:
BLAST of TCONS_00038622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CC1808.935e-1640.22Coiled-coil domain-containing protein 180 OS=Homo ... [more]
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