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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038601 ID=TCONS_00038601|Name=TCONS_00038601|organism=Clytia hemisphaerica|type=transcript|length=1452bp
TGGAAAATGATTTCATTATGTATACTATATGATGTcttttataatgcatg
taatacatTAGTATGGGTGTTATTGGATAATATGATAATTGTTACAGCAT
AATATTAGTTTATAACAAATAACAACAAATTCTCCCTTCcattaatattt
tctttataaaagaCTATACTCTCGTAAGaatcaaacaaaatctttagaAT
GGCTGTATGTCCTTATAACCAAGTTTGTCACTTCTAGGGTGACATCAATT
CTTCTCCCCTGAGGAAGTGAACCATCCCTTTAAAGCTTTAACGTGTGCAG
TCAGCGATAATCCGCGATTAACGGAATATTAGAAGATACACTGTAAGCCT
GTACAAAATGCCGAGTTTATGTTTTCAGCGACCAAAGACGGTTGGTTTTT
GATTTGTCTAGAAACTGGTAAGGGTGACGCTAAATCAATATCAACACTTT
TGACGCCACAGTTAATGAAACAAGCGCGTTACACGACACTGTTTTGGATG
CAATTCCTGGACACCAATCTGCGGAGACGTTTCAATGCATTCtcattgaa
aatataaacgaaTGAACTGATGATGGCGTCCACATAAAACCAGATGAAAG
CATACCGGGCATCGTTCACTAAACCTTGAAAGAAATGCGGTAACGTCCCA
AACGTGAAGAATGAAAGACAGATTAAAAAGGGTgcgaaaattttggattt
ttgattcCGATATAATGAGTTTCGAGTGTCTTTATTGGCTCGTTTGAACT
taatgtaaatgtaaatgtaGACAATAATGAAGACAGAGTTTGTCCCAAGT
AAACCCAGCATGTAAACTGCTATATCAACATAGGCCCAAAATCCGGTTTG
AAGTTTTGTAAGGTATAAAATTAGCACTGTTGTTAAATAAAAAGCACAAG
CTATCCATGATGCAACAACCATGTGAGTTCGTTTGAGGAAAACCCAAGAT
GACTCATAACGTAAATGCAACCAAATGGCAAAGAATCTTTGTAGTGTCAA
TAAAATCATTGCGCCGTAAAAAGGGATAACTGAAGCAGTAGAAAAGCCAT
AGATCAATCTGGAATATTGAGGACTCTCGATGTTAATCGAGATTCGAATA
ATCGACAACACGCAAAAAAGGATAATTGAAATCGACAAACTAAGCAACTC
GACATTTTGTTCGATACTGCTGGATGATGACGTCTTCATCAAAAACCATA
CGGCAAAGACGTGAAGCAGAATCGGCAACATCGCTAAAGCAAAACAGGAA
ATCGACAGAGAGTCCCACTTCCGCATTTTTTATACTTCAATTGAGCAAGT
TATATTAATTTTCTCTTTTAGATCGAGCTGAAAAATATTGTTCTTCTCAG
CTGGAAAgtacaaaatgataaaatttctcCACAATTCGAATTTTGTCTAA
TTCCTataagattttttcgaaaatttaattGGAGAGTCAGAGAGGTCTCC
AG Run BLAST on NCBI transcript from alignment at sc0001891:3958..5409 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038601 ID=TCONS_00038601|Name=TCONS_00038601|organism=Clytia hemisphaerica|type=transcript|length=1452bp|location=Sequence derived from alignment at sc0001891:3958..5409 (Clytia hemisphaerica)
CTGGAGACCTCTCTGACTCTCCaattaaattttcgaaaaaatcttatAGG
AATTAGACAAAATTCGAATTGTGgagaaattttatcattttgtacTTTCC
AGCTGAGAAGAACAATATTTTTCAGCTCGATCTAAAAGAGAAAATTAATA
TAACTTGCTCAATTGAAGTATAAAAAATGCGGAAGTGGGACTCTCTGTCG
ATTTCCTGTTTTGCTTTAGCGATGTTGCCGATTCTGCTTCACGTCTTTGC
CGTATGGTTTTTGATGAAGACGTCATCATCCAGCAGTATCGAACAAAATG
TCGAGTTGCTTAGTTTGTCGATTTCAATTATCCTTTTTTGCGTGTTGTCG
ATTATTCGAATCTCGATTAACATCGAGAGTCCTCAATATTCCAGATTGAT
CTATGGCTTTTCTACTGCTTCAGTTATCCCTTTTTACGGCGCAATGATTT
TATTGACACTACAAAGATTCTTTGCCATTTGGTTGCATTTACGTTATGAG
TCATCTTGGGTTTTCCTCAAACGAACTCACATGGTTGTTGCATCATGGAT
AGCTTGTGCTTTTTATTTAACAACAGTGCTAATTTTATACCTTACAAAAC
TTCAAACCGGATTTTGGGCCTATGTTGATATAGCAGTTTACATGCTGGGT
TTACTTGGGACAAACTCTGTCTTCATTATTGTCtacatttacatttacat
taAGTTCAAACGAGCCAATAAAGACACTCGAAACTCATTATATCGgaatc
aaaaatccaaaattttcgcACCCTTTTTAATCTGTCTTTCATTCTTCACG
TTTGGGACGTTACCGCATTTCTTTCAAGGTTTAGTGAACGATGCCCGGTA
TGCTTTCATCTGGTTTTATGTGGACGCCATCATCAGTTCAttcgtttata
ttttcaatgaGAATGCATTGAAACGTCTCCGCAGATTGGTGTCCAGGAAT
TGCATCCAAAACAGTGTCGTGTAACGCGCTTGTTTCATTAACTGTGGCGT
CAAAAGTGTTGATATTGATTTAGCGTCACCCTTACCAGTTTCTAGACAAA
TCAAAAACCAACCGTCTTTGGTCGCTGAAAACATAAACTCGGCATTTTGT
ACAGGCTTACAGTGTATCTTCTAATATTCCGTTAATCGCGGATTATCGCT
GACTGCACACGTTAAAGCTTTAAAGGGATGGTTCACTTCCTCAGGGGAGA
AGAATTGATGTCACCCTAGAAGTGACAAACTTGGTTATAAGGACATACAG
CCATtctaaagattttgtttgattCTTACGAGAGTATAGtcttttataaa
gaaaatattaatgGAAGGGAGAATTTGTTGTTATTTGTTATAAACTAATA
TTATGCTGTAACAATTATCATATTATCCAATAACACCCATACTAatgtat
tacatgcattataaaagACATCATATAGTATACATAATGAAATCATTTTC
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038601-exon-sc0001891-1491911889:3958..5409 | TCONS_00038601-exon-sc0001891-1491911889:3958..5409 | Clytia hemisphaerica | exon |
| TCONS_00038601-exon-sc0001891-1510915933:3958..5409 | TCONS_00038601-exon-sc0001891-1510915933:3958..5409 | Clytia hemisphaerica | exon |
| TCONS_00038601-exon-sc0001891-1575043694:3958..5409 | TCONS_00038601-exon-sc0001891-1575043694:3958..5409 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001891 | supercontig | sc0001891:3958..5409 . |
Blast
The following BLAST results are available for this feature:
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