TCONS_00038600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038600
Unique NameTCONS_00038600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038600 ID=TCONS_00038600|Name=TCONS_00038600|organism=Clytia hemisphaerica|type=transcript|length=507bp
CCAAGAGAAAGATTTTCTGCCTGCAATGTAGTCAATAGGTTAGTAACATT
TGATAAATCATATCAAGATTCCTCAATGTCAAACGAGGCTTTCCACACGA
TTTCGATCAATCCATCTTTTGACCGTCCTTAACACAGCTTCATCCATGAA
AATGTACACAAAAGAATTAGAGATACTGTCCGCATAAAACCACATAAATG
TGTACCGGACATCGTTTACTGCACCTTGGAAGAAATGCGGTAATGTCCCA
AACAGAAAGAAAGATAGTCCAATTAGAAATGGTGCAAAGAATTTAGATTT
CTGATTTTCGTATAAAGAGGTTCTGATGTCTTGATTTGCTTTCCGATACT
TGATATAAATGTAGGAGTATACAATGAGAAAAACGACATTAGTTGCCAAT
AGCCCTGTTACCGAAATAGCAATACAAATGATCCTCCAAGGAGTCGTGGA
CAGTCTTCCCGTGAGATAAATGATCAATGTTGTTAAGATAAACCAAATAC
ATGCGGT
Run BLAST on NCBI

protein sequence of TCONS_00038600-protein

>TCONS_00038600-protein ID=TCONS_00038600-protein|Name=TCONS_00038600-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
TACIWFILTTLIIYLTGRLSTTPWRIICIAISVTGLLATNVVFLIVYSYI
YIKYRKANQDIRTSLYENQKSKFFAPFLIGLSFFLFGTLPHFFQGAVNDV
RYTFMWFYADSISNSFVYIFMDEAVLRTVKRWIDRNRVESLV
Run BLAST on NCBI

transcript from alignment at sc0001891:2341..2847

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038600 ID=TCONS_00038600|Name=TCONS_00038600|organism=Clytia hemisphaerica|type=transcript|length=507bp|location=Sequence derived from alignment at sc0001891:2341..2847 (Clytia hemisphaerica)
ACCGCATGTATTTGGTTTATCTTAACAACATTGATCATTTATCTCACGGG
AAGACTGTCCACGACTCCTTGGAGGATCATTTGTATTGCTATTTCGGTAA
CAGGGCTATTGGCAACTAATGTCGTTTTTCTCATTGTATACTCCTACATT
TATATCAAGTATCGGAAAGCAAATCAAGACATCAGAACCTCTTTATACGA
AAATCAGAAATCTAAATTCTTTGCACCATTTCTAATTGGACTATCTTTCT
TTCTGTTTGGGACATTACCGCATTTCTTCCAAGGTGCAGTAAACGATGTC
CGGTACACATTTATGTGGTTTTATGCGGACAGTATCTCTAATTCTTTTGT
GTACATTTTCATGGATGAAGCTGTGTTAAGGACGGTCAAAAGATGGATTG
ATCGAAATCGTGTGGAAAGCCTCGTTTGACATTGAGGAATCTTGATATGA
TTTATCAAATGTTACTAACCTATTGACTACATTGCAGGCAGAAAATCTTT
CTCTTGG

Coding sequence (CDS) from alignment at sc0001891:2341..2847

>TCONS_00038600 ID=TCONS_00038600|Name=TCONS_00038600|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0001891:2341..2847 (Clytia hemisphaerica)
ACCGCATGTATTTGGTTTATCTTAACAACATTGATCATTTATCTCACGGG
AAGACTGTCCACGACTCCTTGGAGGATCATTTGTATTGCTATTTCGGTAA
CAGGGCTATTGGCAACTAATGTCGTTTTTCTCATTGTATACTCCTACATT
TATATCAAGTATCGGAAAGCAAATCAAGACATCAGAACCTCTTTATACGA
AAATCAGAAATCTAAATTCTTTGCACCATTTCTAATTGGACTATCTTTCT
TTCTGTTTGGGACATTACCGCATTTCTTCCAAGGTGCAGTAAACGATGTC
CGGTACACATTTATGTGGTTTTATGCGGACAGTATCTCTAATTCTTTTGT
GTACATTTTCATGGATGAAGCTGTGTTAAGGACGGTCAAAAGATGGATTG
ATCGAAATCGTGTGGAAAGCCTCGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023167XLOC_023167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038600-exon-sc0001891-1491911889:2341..2847TCONS_00038600-exon-sc0001891-1491911889:2341..2847Clytia hemisphaericaexon
TCONS_00038600-exon-sc0001891-1510915933:2341..2847TCONS_00038600-exon-sc0001891-1510915933:2341..2847Clytia hemisphaericaexon
TCONS_00038600-exon-sc0001891-1575043694:2341..2847TCONS_00038600-exon-sc0001891-1575043694:2341..2847Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038600-proteinTCONS_00038600-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001891supercontigsc0001891:2341..2847 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.714317	0.348286	1.34798	1.05503	0.160549	0.253737	0	0	0	0.124267	0.120616	0	0	0	0	0	0	0.0916039	0	0	0.230214	0.336871	0	0	0	0.114078	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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