TCONS_00038595 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038595
Unique NameTCONS_00038595
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length586

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038595 ID=TCONS_00038595|Name=TCONS_00038595|organism=Clytia hemisphaerica|type=transcript|length=586bp
GCTTTGGGAGACATGATGTGCCTTGATAGCTCGATATCAGATTGAGTTGA
ATGGGGTACCTTTGGTTTGATGTCAACTTGCTTGGATGATTCAGTTGGTA
AGGTATCCTCTTGACTTCGATCGGATGTGTCCGGTGATTTGTAAGATGTG
TCTGGTGATTCGTAAGATGTGTCCAGTAGTTGTTCGGATGTTTCCGGTGA
TTCGTCTAGTGATGACCTTCCGAGTGAATTGAATACACTGTAGTTCGATA
TTCTTTTGGTCTTTCTAGTCGATCTGCGTAAGGACATTTGATGTTGATAA
GTGATGACTGATTGCCTGAGTGATGGATGACGAATTGGTCTGATTGACTG
GTCGCCTTGATGATTGGATCTGTTTGACTGTGGGGTTACCGGTACTGGCG
GGCATTAATCAGGCGAGTTTTGTACGATTTGTATGTTGATATTGATAAAC
CGTCAAACTAAACAATGCAAAATGAAAATAGTGTAAGTATAAAGTTTGAC
AGTGAAAGAAAATAAGCCTAAGTCTATGAGTGAATCTATAATTATGtagg
aaataaataaaatgtctGAGTTGAATAATATCTAAG
Run BLAST on NCBI

transcript from alignment at sc0001890:9419..10004

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038595 ID=TCONS_00038595|Name=TCONS_00038595|organism=Clytia hemisphaerica|type=transcript|length=586bp|location=Sequence derived from alignment at sc0001890:9419..10004 (Clytia hemisphaerica)
CTTAGATATTATTCAACTCagacattttatttatttcctaCATAATTATA
GATTCACTCATAGACTTAGGCTTATTTTCTTTCACTGTCAAACTTTATAC
TTACACTATTTTCATTTTGCATTGTTTAGTTTGACGGTTTATCAATATCA
ACATACAAATCGTACAAAACTCGCCTGATTAATGCCCGCCAGTACCGGTA
ACCCCACAGTCAAACAGATCCAATCATCAAGGCGACCAGTCAATCAGACC
AATTCGTCATCCATCACTCAGGCAATCAGTCATCACTTATCAACATCAAA
TGTCCTTACGCAGATCGACTAGAAAGACCAAAAGAATATCGAACTACAGT
GTATTCAATTCACTCGGAAGGTCATCACTAGACGAATCACCGGAAACATC
CGAACAACTACTGGACACATCTTACGAATCACCAGACACATCTTACAAAT
CACCGGACACATCCGATCGAAGTCAAGAGGATACCTTACCAACTGAATCA
TCCAAGCAAGTTGACATCAAACCAAAGGTACCCCATTCAACTCAATCTGA
TATCGAGCTATCAAGGCACATCATGTCTCCCAAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023163XLOC_023163Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038595-exon-sc0001890-1491911889:9419..10004TCONS_00038595-exon-sc0001890-1491911889:9419..10004Clytia hemisphaericaexon
TCONS_00038595-exon-sc0001890-1510915933:9419..10004TCONS_00038595-exon-sc0001890-1510915933:9419..10004Clytia hemisphaericaexon
TCONS_00038595-exon-sc0001890-1575043694:9419..10004TCONS_00038595-exon-sc0001890-1575043694:9419..10004Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001890supercontigsc0001890:9419..10004 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.9857	1.58306	2.02447	2.77745	3.28108	2.00566	2.05679	2.5787	0.793008	2.00803	0	0.386246	0.665835	1.97157	0.253931	0.11469	0.353223	0.289634	0.400145	0.837445	0.545919	0	0.323698	0.353305	3.8394	1.9838	0.258074	0.413136	1.35785	1.25704
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038595 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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