TCONS_00038593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038593
Unique NameTCONS_00038593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038593 ID=TCONS_00038593|Name=TCONS_00038593|organism=Clytia hemisphaerica|type=transcript|length=212bp
GAAGGAAGGACATCTGAGAAATTGAAGAAGATGAATGTGTCTCTccagaa
tcaaaacaaaatgatgGCAGACTTGTATGGTACACAGGAAGGTGTGGTAG
TACAGGAAGGCTTGGCTGATGCAGTCGATGAGCCTGATTTTGATGCAAAG
CTTGCTAGCCTTAAAGATGTATGGCATGAACATACGCCCTGGTTTCACGT
CTGGTTTGTCAA
Run BLAST on NCBI

transcript from alignment at sc0001890:27434..27769-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038593 ID=TCONS_00038593|Name=TCONS_00038593|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0001890:27434..27769- (Clytia hemisphaerica)
GAAGGAAGGACATCTGAGAAATTGAAGAAGATGAATGTGTCTCTCCAGAA
TCAAAACAAAATGATGGCAGACTTGTATGGTACACAGGAAGGTGTGGTAG
TACAGGAAGGCTTGGCTGATGCAGTCGATGAGCCTGATTTTGATGCAAAG
GTTAGTTTCTTTCAACGTGTTAATTATATTGGAGTTATGTGAATTTAATT
TCTCAAACTTGAAGATTTCATTCCATGAAAATTGAAAACAGCTTATGAAA
GGTAATCATTTTGATCTTTTTTAGCTTGCTAGCCTTAAAGATGTATGGCA
TGAACATACGCCCTGGTTTCACGTCTGGTTTGTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023161XLOC_023161Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038593-exon-sc0001890-1575043694:27620..27769TCONS_00038593-exon-sc0001890-1575043694:27620..27769Clytia hemisphaericaexon
TCONS_00038593-exon-sc0001890-1575043694:27434..27495TCONS_00038593-exon-sc0001890-1575043694:27434..27495Clytia hemisphaericaexon
TCONS_00038593-exon-sc0001890-1510915933:27620..27769TCONS_00038593-exon-sc0001890-1510915933:27620..27769Clytia hemisphaericaexon
TCONS_00038593-exon-sc0001890-1510915933:27434..27495TCONS_00038593-exon-sc0001890-1510915933:27434..27495Clytia hemisphaericaexon
TCONS_00038593-exon-sc0001890-1491911889:27620..27769TCONS_00038593-exon-sc0001890-1491911889:27620..27769Clytia hemisphaericaexon
TCONS_00038593-exon-sc0001890-1491911889:27434..27495TCONS_00038593-exon-sc0001890-1491911889:27434..27495Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001890supercontigsc0001890:27434..27769 -
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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