TCONS_00038591 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038591
Unique NameTCONS_00038591
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length565

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038591 ID=TCONS_00038591|Name=TCONS_00038591|organism=Clytia hemisphaerica|type=transcript|length=565bp
ttttaaagtttttaatcgttGATAGAGGGGCTTCGGCCCCGAAGTACATT
GGGCCTAGTGTACTTCTTGTTCCTGTTTGCTAATTTGAAATACCTCTGTC
TGTTTAGTAATCTCTTCTTTTAATTATCTTATCTTCTCTGACACTTACGT
CACCACACTATGTCAAATAGTACCAAAAGAGGTCCTCCATCTCCTCTTGA
TGATGTAAGTCACAACATTGAAGACTTAAAAGCTGATTTTAACTCtcaga
agaaacaaaaagtcCACTTTGGCATTTCCAGAATTATTAAACCACGTTCT
CGTTCTAACTCACAATCCTCTACTACTTCTAACTCTGAAAATTCTGACTT
GTCTTCCTCCTCCAAATTAAAATCTCTCGAAAATAACCGCTCTTCTTCTA
AATTAAAATCTTCTGAAAATAATCCTTCTTCTTCAAAATTAAATCCTTCC
ATAATTAAACCTCAAGAAACACACTCTGATGAAGTAATGTTAGAAACAGG
CTTTGAGACCAAAAGAACACCTAGAAATCCTTTCATCCAAGAAACaccca
aaaagaaaaagataa
Run BLAST on NCBI

protein sequence of TCONS_00038591-protein

>TCONS_00038591-protein ID=TCONS_00038591-protein|Name=TCONS_00038591-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MSNSTKRGPPSPLDDVSHNIEDLKADFNSQKKQKVHFGISRIIKPRSRSN
SQSSTTSNSENSDLSSSSKLKSLENNRSSSKLKSSENNPSSSKLNPSIIK
PQETHSDEVMLETGFETKRTPRNPFIQETPKKKKI
Run BLAST on NCBI

transcript from alignment at sc0001889:32309..32873

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038591 ID=TCONS_00038591|Name=TCONS_00038591|organism=Clytia hemisphaerica|type=transcript|length=565bp|location=Sequence derived from alignment at sc0001889:32309..32873 (Clytia hemisphaerica)
ttatctttttctttttgggtGTTTCTTGGATGAAAGGATTTCTAGGTGTT
CTTTTGGTCTCAAAGCCTGTTTCTAACATTACTTCATCAGAGTGTGTTTC
TTGAGGTTTAATTATGGAAGGATTTAATTTTGAAGAAGAAGGATTATTTT
CAGAAGATTTTAATTTAGAAGAAGAGCGGTTATTTTCGAGAGATTTTAAT
TTGGAGGAGGAAGACAAGTCAGAATTTTCAGAGTTAGAAGTAGTAGAGGA
TTGTGAGTTAGAACGAGAACGTGGTTTAATAATTCTGGAAATGCCAAAGT
GgactttttgtttcttctgaGAGTTAAAATCAGCTTTTAAGTCTTCAATG
TTGTGACTTACATCATCAAGAGGAGATGGAGGACCTCTTTTGGTACTATT
TGACATAGTGTGGTGACGTAAGTGTCAGAGAAGATAAGATAATTAAAAGA
AGAGATTACTAAACAGACAGAGGTATTTCAAATTAGCAAACAGGAACAAG
AAGTACACTAGGCCCAATGTACTTCGGGGCCGAAGCCCCTCTATCaacga
ttaaaaactttaaaa

Coding sequence (CDS) from alignment at sc0001889:32309..32873

>TCONS_00038591 ID=TCONS_00038591|Name=TCONS_00038591|organism=Clytia hemisphaerica|type=CDS|length=405bp|location=Sequence derived from alignment at sc0001889:32309..32873 (Clytia hemisphaerica)
tatctttttctttttgggtGTTTCTTGGATGAAAGGATTTCTAGGTGTTC
TTTTGGTCTCAAAGCCTGTTTCTAACATTACTTCATCAGAGTGTGTTTCT
TGAGGTTTAATTATGGAAGGATTTAATTTTGAAGAAGAAGGATTATTTTC
AGAAGATTTTAATTTAGAAGAAGAGCGGTTATTTTCGAGAGATTTTAATT
TGGAGGAGGAAGACAAGTCAGAATTTTCAGAGTTAGAAGTAGTAGAGGAT
TGTGAGTTAGAACGAGAACGTGGTTTAATAATTCTGGAAATGCCAAAGTG
gactttttgtttcttctgaGAGTTAAAATCAGCTTTTAAGTCTTCAATGT
TGTGACTTACATCATCAAGAGGAGATGGAGGACCTCTTTTGGTACTATTT
GACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023159XLOC_023159Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038591-proteinTCONS_00038591-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038591-exon-sc0001889-1491911889:32309..32873TCONS_00038591-exon-sc0001889-1491911889:32309..32873Clytia hemisphaericaexon
TCONS_00038591-exon-sc0001889-1510915933:32309..32873TCONS_00038591-exon-sc0001889-1510915933:32309..32873Clytia hemisphaericaexon
TCONS_00038591-exon-sc0001889-1575043694:32309..32873TCONS_00038591-exon-sc0001889-1575043694:32309..32873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001889supercontigsc0001889:32309..32873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.725734	0.244895	0.745789	1.04743	0.000475782	0.238979	0.665765	0.388771	0.426518	0.325468	0.02772	0	0	0.568013	0.437799	0.106408	0.445307	0.479618	0.824205	0.941054	0.462246	0.382627	0	0.136289	1.04597	1.23895	0.600838	0.436025	0.988354	1.09735
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038591 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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