TCONS_00038589 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038589
Unique NameTCONS_00038589
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length428

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038589 ID=TCONS_00038589|Name=TCONS_00038589|organism=Clytia hemisphaerica|type=transcript|length=428bp
AAAAAGACATGGAGTTACATCAAAACCATTTTAGACGGTGAGAAAGTAAA
CACCCAACATAAAGAACAAACTTTTACTAAAGACGACGgttccaaaatta
aaaacaagcaAGATATTGCAGATGCCTTTAAGGAAAGAcaagaaaatatc
tttcaacCCAATCTATCAAATGATAGAAGACATAAGTACGTTGTAGACCA
CTGGTtcgaaaacacccaatttcacAGAAGAGAACGACATTCAATTTACC
ACATGCTAGACCCATTACTAACCAGGCACGAAATAGATGAACAAATAACA
GATCAAGAAGTAGCTAATGTTCTTAAAAGCCTCAAATCCCACAAAGCACC
AGGTCATGATGCCATACAAAATAAACTTCTTTCCACACTTTCTCCTATTC
TTATATCACCACTATCTTCTCTTTTTAA
Run BLAST on NCBI

protein sequence of TCONS_00038589-protein

>TCONS_00038589-protein ID=TCONS_00038589-protein|Name=TCONS_00038589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
KKTWSYIKTILDGEKVNTQHKEQTFTKDDGSKIKNKQDIADAFKERQENI
FQPNLSNDRRHKYVVDHWFENTQFHRRERHSIYHMLDPLLTRHEIDEQIT
DQEVANVLKSLKSHKAPGHDAIQNKLLSTLSPILISPLSSLF
Run BLAST on NCBI

transcript from alignment at sc0001889:29189..29616

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038589 ID=TCONS_00038589|Name=TCONS_00038589|organism=Clytia hemisphaerica|type=transcript|length=428bp|location=Sequence derived from alignment at sc0001889:29189..29616 (Clytia hemisphaerica)
TTAAAAAGAGAAGATAGTGGTGATATAAGAATAGGAGAAAGTGTGGAAAG
AAGTTTATTTTGTATGGCATCATGACCTGGTGCTTTGTGGGATTTGAGGC
TTTTAAGAACATTAGCTACTTCTTGATCTGTTATTTGTTCATCTATTTCG
TGCCTGGTTAGTAATGGGTCTAGCATGTGGTAAATTGAATGTCGTTCTCT
TCTgtgaaattgggtgttttcgaACCAGTGGTCTACAACGTACTTATGTC
TTCTATCATTTGATAGATTGGgttgaaagatattttcttgTCTTTCCTTA
AAGGCATCTGCAATATCTtgcttgtttttaattttggaacCGTCGTCTTT
AGTAAAAGTTTGTTCTTTATGTTGGGTGTTTACTTTCTCACCGTCTAAAA
TGGTTTTGATGTAACTCCATGTCTTTTT

Coding sequence (CDS) from alignment at sc0001889:29189..29616

>TCONS_00038589 ID=TCONS_00038589|Name=TCONS_00038589|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at sc0001889:29189..29616 (Clytia hemisphaerica)
AAAAAGAGAAGATAGTGGTGATATAAGAATAGGAGAAAGTGTGGAAAGAA
GTTTATTTTGTATGGCATCATGACCTGGTGCTTTGTGGGATTTGAGGCTT
TTAAGAACATTAGCTACTTCTTGATCTGTTATTTGTTCATCTATTTCGTG
CCTGGTTAGTAATGGGTCTAGCATGTGGTAAATTGAATGTCGTTCTCTTC
TgtgaaattgggtgttttcgaACCAGTGGTCTACAACGTACTTATGTCTT
CTATCATTTGATAGATTGGgttgaaagatattttcttgTCTTTCCTTAAA
GGCATCTGCAATATCTtgcttgtttttaattttggaacCGTCGTCTTTAG
TAAAAGTTTGTTCTTTATGTTGGGTGTTTACTTTCTCACCGTCTAAAATG
GTTTTGATGTAACTCCATGTCTTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023157XLOC_023157Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038589-exon-sc0001889-1491911889:29189..29616TCONS_00038589-exon-sc0001889-1491911889:29189..29616Clytia hemisphaericaexon
TCONS_00038589-exon-sc0001889-1510915933:29189..29616TCONS_00038589-exon-sc0001889-1510915933:29189..29616Clytia hemisphaericaexon
TCONS_00038589-exon-sc0001889-1575043694:29189..29616TCONS_00038589-exon-sc0001889-1575043694:29189..29616Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038589-proteinTCONS_00038589-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001889supercontigsc0001889:29189..29616 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161999	0.315949	0	0.899754	0.436929	0.690534	0	0.742724	0	0	0	0	0.337299	0.111889	0.407086	0.541745	0.564562	0.421101	0.597619	0	0.231178	1.17904	0.776981	0	0.869655	2.09265	1.93165	1.38021	0.906453	0.420027
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038589 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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