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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038587 ID=TCONS_00038587|Name=TCONS_00038587|organism=Clytia hemisphaerica|type=transcript|length=1051bp
NNCCGCCGTAAACTCAACCGAGGCAGACCGCGCAAATTGAGTGAACGTGA
TGAACGCATTTTGATCAGAAACATTAACCGGTTGCGTAACTCTATTGGAC
CGTTTACGTTAAGACGCTTATCTTTAGAATCTGGTATTGACGAGGGAATC
TCTATGGCAACAATTTCTAGAGTACTAAGAAAACATGGGTACCGCTACCT
ACACTCACGTCGCAAAGGTATTATGAAGCGTACAGACTTCCATAAGAGAC
TCACTTTTGCCCGGAAAGCATTGAGGTTCCCAAAGAACTTTTGGATGAAT
CGTATAAATTTCTATCTTGATGGCACAGGTTTTACGCATAAGAATAACCC
CCATGATGAAGCTCGATCAACAAGAACTATGGCATGGAGGAGGCGCTCAG
AGGGATTAAGTCCTTTATGCACAACAAAGGGGAAGCGGGCTGGTACAGGT
GGACGTATGTCTAATTTTATGGTAGCACTTTCACCACGTCGTGGCGTTGT
TTTTTGTAAACAGTACTACAAGCGCTGGAATGGAGACAACTTCTCGGCAA
TGGTAAGGAAGGATTTCCCGGACGTGCTTAAAAAGACTGCACATATCAAA
GGCAACATGTTTCTTCAAGATGGGTGTCCAGTGCAGAATTCTGCAAAGGC
GAAACAAGCTTTCAAAGATGTGGATGCAGAAGTATTCCCAATCCCTCCAA
GAAGTCCCGATATCAATCCcatagaaaattttttcaacttgGTTGCACGT
CAATTATCGGAAGATGCTTTGAAAAACCGCAtcacaaaggaaaattttga
ggaGTTCAGTGCACGAGTCAAAAGCACAATTGAAAACTTTGATAAGCGCA
TGGTGGACCGTATCATTAAATCGATGCCCAATCGCATGCTAAAGATTGTG
AAACGACGTGGTGGCAGACTGCGGTATTAGctaaatttgtaacttttttt
gttgtttgggGGGGTCTACGGCGCTTGTGGTTCCTAACAAACACAATTAA
CCACAGTTAACCACAGTTAACCACAGTTAACCAGTgctcctttaaaaaaa
a Run BLAST on NCBI protein sequence of TCONS_00038587-protein >TCONS_00038587-protein ID=TCONS_00038587-protein|Name=TCONS_00038587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
XRRKLNRGRPRKLSERDERILIRNINRLRNSIGPFTLRRLSLESGIDEGI
SMATISRVLRKHGYRYLHSRRKGIMKRTDFHKRLTFARKALRFPKNFWMN
RINFYLDGTGFTHKNNPHDEARSTRTMAWRRRSEGLSPLCTTKGKRAGTG
GRMSNFMVALSPRRGVVFCKQYYKRWNGDNFSAMVRKDFPDVLKKTAHIK
GNMFLQDGCPVQNSAKAKQAFKDVDAEVFPIPPRSPDINPIENFFNLVAR
QLSEDALKNRITKENFEEFSARVKSTIENFDKRMVDRIIKSMPNRMLKIV
KRRGGRLRY Run BLAST on NCBI transcript from alignment at sc0001889:1925..2975 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038587 ID=TCONS_00038587|Name=TCONS_00038587|organism=Clytia hemisphaerica|type=transcript|length=1051bp|location=Sequence derived from alignment at sc0001889:1925..2975 (Clytia hemisphaerica)
ttttttttaaaggagcACTGGTTAACTGTGGTTAACTGTGGTTAACTGTG
GTTAATTGTGTTTGTTAGGAACCACAAGCGCCGTAGACCCCcccaaacaa
caaaaaaagttacaaatttagCTAATACCGCAGTCTGCCACCACGTCGTT
TCACAATCTTTAGCATGCGATTGGGCATCGATTTAATGATACGGTCCACC
ATGCGCTTATCAAAGTTTTCAATTGTGCTTTTGACTCGTGCACTGAACtc
ctcaaaattttcctttgtgaTGCGGTTTTTCAAAGCATCTTCCGATAATT
GACGTGCAACcaagttgaaaaaattttctatgGGATTGATATCGGGACTT
CTTGGAGGGATTGGGAATACTTCTGCATCCACATCTTTGAAAGCTTGTTT
CGCCTTTGCAGAATTCTGCACTGGACACCCATCTTGAAGAAACATGTTGC
CTTTGATATGTGCAGTCTTTTTAAGCACGTCCGGGAAATCCTTCCTTACC
ATTGCCGAGAAGTTGTCTCCATTCCAGCGCTTGTAGTACTGTTTACAAAA
AACAACGCCACGACGTGGTGAAAGTGCTACCATAAAATTAGACATACGTC
CACCTGTACCAGCCCGCTTCCCCTTTGTTGTGCATAAAGGACTTAATCCC
TCTGAGCGCCTCCTCCATGCCATAGTTCTTGTTGATCGAGCTTCATCATG
GGGGTTATTCTTATGCGTAAAACCTGTGCCATCAAGATAGAAATTTATAC
GATTCATCCAAAAGTTCTTTGGGAACCTCAATGCTTTCCGGGCAAAAGTG
AGTCTCTTATGGAAGTCTGTACGCTTCATAATACCTTTGCGACGTGAGTG
TAGGTAGCGGTACCCATGTTTTCTTAGTACTCTAGAAATTGTTGCCATAG
AGATTCCCTCGTCAATACCAGATTCTAAAGATAAGCGTCTTAACGTAAAC
GGTCCAATAGAGTTACGCAACCGGTTAATGTTTCTGATCAAAATGCGTTC
ATCACGTTCACTCAATTTGCGCGGTCTGCCTCGGTTGAGTTTACGGCGGN
N Coding sequence (CDS) from alignment at sc0001889:1925..2975 >TCONS_00038587 ID=TCONS_00038587|Name=TCONS_00038587|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at sc0001889:1925..2975 (Clytia hemisphaerica)
CTAATACCGCAGTCTGCCACCACGTCGTTTCACAATCTTTAGCATGCGAT
TGGGCATCGATTTAATGATACGGTCCACCATGCGCTTATCAAAGTTTTCA
ATTGTGCTTTTGACTCGTGCACTGAACtcctcaaaattttcctttgtgaT
GCGGTTTTTCAAAGCATCTTCCGATAATTGACGTGCAACcaagttgaaaa
aattttctatgGGATTGATATCGGGACTTCTTGGAGGGATTGGGAATACT
TCTGCATCCACATCTTTGAAAGCTTGTTTCGCCTTTGCAGAATTCTGCAC
TGGACACCCATCTTGAAGAAACATGTTGCCTTTGATATGTGCAGTCTTTT
TAAGCACGTCCGGGAAATCCTTCCTTACCATTGCCGAGAAGTTGTCTCCA
TTCCAGCGCTTGTAGTACTGTTTACAAAAAACAACGCCACGACGTGGTGA
AAGTGCTACCATAAAATTAGACATACGTCCACCTGTACCAGCCCGCTTCC
CCTTTGTTGTGCATAAAGGACTTAATCCCTCTGAGCGCCTCCTCCATGCC
ATAGTTCTTGTTGATCGAGCTTCATCATGGGGGTTATTCTTATGCGTAAA
ACCTGTGCCATCAAGATAGAAATTTATACGATTCATCCAAAAGTTCTTTG
GGAACCTCAATGCTTTCCGGGCAAAAGTGAGTCTCTTATGGAAGTCTGTA
CGCTTCATAATACCTTTGCGACGTGAGTGTAGGTAGCGGTACCCATGTTT
TCTTAGTACTCTAGAAATTGTTGCCATAGAGATTCCCTCGTCAATACCAG
ATTCTAAAGATAAGCGTCTTAACGTAAACGGTCCAATAGAGTTACGCAAC
CGGTTAATGTTTCTGATCAAAATGCGTTCATCACGTTCACTCAATTTGCG
CGGTCTGCCTCGGTTGAGTTTACGGCGGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038587-exon-sc0001889-1491911889:1925..2975 | TCONS_00038587-exon-sc0001889-1491911889:1925..2975 | Clytia hemisphaerica | exon |
| TCONS_00038587-exon-sc0001889-1510915933:1925..2975 | TCONS_00038587-exon-sc0001889-1510915933:1925..2975 | Clytia hemisphaerica | exon |
| TCONS_00038587-exon-sc0001889-1575043694:1925..2975 | TCONS_00038587-exon-sc0001889-1575043694:1925..2975 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001889 | supercontig | sc0001889:1925..2975 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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