TCONS_00038584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038584
Unique NameTCONS_00038584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length530

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038584 ID=TCONS_00038584|Name=TCONS_00038584|organism=Clytia hemisphaerica|type=transcript|length=530bp
ctacggctattaggtacccgagaataAGTATGAACATCATGGTATGAAAT
TTTACACAATAATATATACATAGCACTTCTATCTACattaatttataaaa
aagatttacaaCGATAAATGGTATTTATATAcgatataaaatattttatt
tttgaatatacacattttacaaaaatatatctGATTTCACATTAATTGGC
GaatctttatgaaattttttacttattttcaaGCGTAATAAGACTTGATA
CAAAGGTATAAGGTTTTATTGATATATagattaaagtatatttggaGGGA
ATGGTTTCGCTAAAAGCCCAAATTTTATCAATGGTTTTAGTCTGGAATTT
TGCccacatttttcaaatcttctaAGACTAAAGATTGATCAAtgcaaaaa
ttttaattatttcttcTTAAATTTTCCATCTTTGATAACTAAAATATTGT
TTAATAATGTCAAAGATTCCTCGCTTTTCATTCTTTCGTATTGGCTTCCG
GCATCAAACATCATCGACAAATCAGACAAA
Run BLAST on NCBI

transcript from alignment at sc0001885:1963..2492

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038584 ID=TCONS_00038584|Name=TCONS_00038584|organism=Clytia hemisphaerica|type=transcript|length=530bp|location=Sequence derived from alignment at sc0001885:1963..2492 (Clytia hemisphaerica)
TTTGTCTGATTTGTCGATGATGTTTGATGCCGGAAGCCAATACGAAAGAA
TGAAAAGCGAGGAATCTTTGACATTATTAAACAATATTTTAGTTATCAAA
GATGGAAAATTTAAgaagaaataattaaaatttttgcaTTGATCAATCTT
TAGTCTtagaagatttgaaaaatgtggGCAAAATTCCAGACTAAAACCAT
TGATAAAATTTGGGCTTTTAGCGAAACCATTCCCtccaaatatactttaa
tctATATATCAATAAAACCTTATACCTTTGTATCAAGTCTTATTACGCtt
gaaaataagtaaaaaatttcataaagattCGCCAATTAATGTGAAATCag
atatatttttgtaaaatgtgtatattcaaaaataaaatattttatatcgT
ATATAAATACCATTTATCGttgtaaatcttttttataaattaatGTAGAT
AGAAGTGCTATGTATATATTATTGTGTAAAATTTCATACCATGATGTTCA
TACTtattctcgggtacctaatagccgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023152XLOC_023152Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038584-exon-sc0001885-1491911889:1963..2492TCONS_00038584-exon-sc0001885-1491911889:1963..2492Clytia hemisphaericaexon
TCONS_00038584-exon-sc0001885-1510915933:1963..2492TCONS_00038584-exon-sc0001885-1510915933:1963..2492Clytia hemisphaericaexon
TCONS_00038584-exon-sc0001885-1575043694:1963..2492TCONS_00038584-exon-sc0001885-1575043694:1963..2492Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001885supercontigsc0001885:1963..2492 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.215554	0	0	0	0	0.142094	0.133027	0.201905	1.35963	0.493641	0	0.227481	0.916029	0.0627584	0	0.165938	0	0.606455	0.802286	0	0	0.126723	0.11521	0	0	0	0	0.122671	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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