TCONS_00038583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038583
Unique NameTCONS_00038583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3004

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038583 ID=TCONS_00038583|Name=TCONS_00038583|organism=Clytia hemisphaerica|type=transcript|length=3004bp
AGATTTATTTGGAGAGAATGGCAGAAGAAGGACCTGAATCCATACTAACA
GATGAGATTGAATCACTCCGAGCAATTTATGAAGACCACTTTGTAGTCAT
TGAGAATAGTGAACAATATAAAGAGATAGTATATCAAACCCAAAAAGGCT
CACAAATTACATTTTCCATTTGTGAAAACTATCCAGATATTGTACCAAGT
ATTAAAGTTGGCTTGAATTTGTTAAGTGAAGGAAGAATTGTCCATGAATT
GAGTAATTATGCAAAGGAAGAATTAGTCGGACGTTCTATGTTGTTTTCAC
TCATTACtaaatttgaagaaattatCGATCAACTTAATGAAATGTCAATT
GAACAAGAATCTTTACAAGACCCTAGCGGGACAGTTGACGCAGTAGACCT
GGAAATGTCATCTGAAAGCATTGATGGTCCATCTAAAGCTGACTGCAGTT
CTGAAACATCCCCGGGAAACACGTCCACCCTAGCAGAAGNGATGGTCCAT
CTAAAGCTGACTGCAGTTCTGAAACATCCCCGGGAAACACGTACACCCTA
GCAGAAGAAGATGTTTGCAAGTTCTTTTTGAAAGGCCAATGCAGGTTTGG
TGATAAATGCCGAAACAAGCATCCTGGAGGCAGCCCTTCGAAATCTCAAA
CATCTAACAAAAATGATCTTTCCACTGCAAATGAGAAGAAAGGtaccaat
aaaaacaagaagaaaCAAAATCAACACTTAGAAACAAAGGAATTTACtcc
aaaacataaaaaagaagcatcaatcaaaacaaaagaaactgACGAAGAAG
GAATTAGTACCAAAAAGGCCTCGATGAAAACAGCTACAGATGTTATACAC
CGCATATTGTGGGATGATGCCTTGCCTACCCAAGATTTTATTGTTGGTTA
CCTTGATCGTTTTGTCGGGATAATCGAGAAACCATTCACAGCTTTCTCTT
GGGAGGATATCGCTTCAGTGGATATGAACGTGTTGGCTGTACCAAAACAC
AGGattcaatatttcaaatatttggATGTTGTGGTTTGGGATAAGAATAA
AAGAATGGATAAGGTGTTCGGTTCAACTGGCAATTCTGAAACCATTCTCG
ACATCATCGATTCCCAATGGAGAGAACAGTCTAGTCAAAAACAAGAATCG
AAGgctaaagatgaaaagaaaaaacaacagaGGCGAACACAAGACAGAGT
TCACGATGAAAAGAACAGACCAAATTATTTCCTGTGTGTACCAATTACAG
ACCCAGAAATCAGGAAAAATGTAAAAGAGGCCCAAGATCATATCACTACA
TCTGATAATCGGTTGACAGAGATTTCTCATGATGCCGACAGACTGCATGT
CACATTATGCATGTTCCGTCTAAACACAGAGGAAGACAAGTCGAAAGCTA
AACAAGTTTTACAGTCGGTAACACCACTTCTACCCTGCCTTGTACCATTG
AATTCATacaaatttgacgtcaaatataccGATCATTTTAACCGTCGTGT
GGTTTATGCCGGAGTTTATCCATCACCGGAATTATTGAAACTACAAGACA
TTATTGTGACCAAGCTGAAAAACGCTGGCATTCATTTATGTGGAAATCAC
GACGAATTTACACCGCATTTGACCATGCTAAAAATCACCCGACCTTTTAT
GAAAGATAATGATATCAACGAAATCAATCCTTTTgtattcaataaaatca
agcaaaaaacATTCGGTAAACAACAAGTTTCCGCATTACGGATATGTGAA
ACTGGACCGGAAAGAGGCGCTGATAATTTTTATGTAACTCTAACACGCat
tgaaaattctttgttaTCTATATCGGATTCTCTACCACAGTTAGTTGCTA
ACAACTTGACAAACCAAATGAGCCAAGGAATCATTGATGAAGGCTTAGGA
GATTCCCTGCTTTGTGGAATTATCTCTGCAGAAAGGGATTCCTTCGAAAA
AGAAACGTCAATCATGGAACGATGTCTTATCGAATCTAGTTGGGAATCCA
CTaagaaaatgatcattttgaGGGGACTTCCTGGCTCTGGGAAATCTgaa
attgccaaaaaactgaTGCAGGGTCATCAAAGCTGTAAGACGTTTTCGGC
GGATGGTTATTTTACAGAACAAGCTGTCGCTTTGAACACAGATTACAAAT
TTGTTGGCAAGGAGATTGATGCTGCTCACAAGTATTGCCGTGACCGAGTA
ATCGAGGCAATTCAAAATGGTACCGAAGTAGTAATAATTGATAATACTCA
CTCGCAACGGTGGGAATACCGTATTTACGAGCGATTAGCCATTCTATGTG
GGTTCAAAAGTCATGTTGTGGAAATCGAATGCTCTAATGATTCTACGAGA
CAGGATTTCCAAAAACGTTGTATACACCACGTGACTGACCACGTGCACAA
AGAGATGTACACGCGTTGGGAACATGATCCTCAAGCAATCATGACTTCAC
AACGTGATCAAGAGCGTCTCAGTCTTGACTGGATCACCGACCATCGTGAC
CGCCCAATTCTTTATTCTGCACTATTCTTGGATCAAAAATCGAAAGATTT
ATTGAAAATGACCCGCCCGCCGACTATGAGTCGTATCCATTCCGACCACA
TGACGTTGATGTATGACCCTACCATGGAACATCTAGAAAAGTTACCGGTT
GGGACACCTTTCCGGATTGAGCTATCAGGATATGCTGGCAACAACAAAGC
ACAAGCGATGTCAGTCATCGAAATTGAGGACCAAAAATTATGCATGAGCA
ACCATCCACATGTTACCATAGCAACCAATAAAGGTTTTAGACCTGGTGAC
GTCGAAAAAATGTTGGATTCTTACACATGTCAGAAAGTGgaatgtgacgt
cattttgactGGTGTTGTGGGTGTTCGGGTAGCCATTAATGAGCGGGAAA
GCGTCACTTGTATCGATGAgcattatttcaaaaagttattgGCAAAGCAG
GCTGTTACAAAGaatattttttgttttatccaTGATTTGACCAGCACCAT
CAAG
Run BLAST on NCBI

transcript from alignment at sc0001885:14382..28241-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038583 ID=TCONS_00038583|Name=TCONS_00038583|organism=Clytia hemisphaerica|type=transcript|length=13860bp|location=Sequence derived from alignment at sc0001885:14382..28241- (Clytia hemisphaerica)
AGATTTATTTGGAGAGAATGGCAGAAGAAGGACCTGAATCCATACTAACA
GATGAGATTGAATCACTCCGAGCAATTTATGAAGACCACTTTGTAGTCAT
TGAGAATAGTGAACAATATAAAGAGATAGTATATCAAACCCAAAAAGGCT
CACAAATTACATTTTCCATTTGTGGTTTGTATATATTATTTAGAATGATG
ATAATTTTCGATTAATATTGCATGATAAACATCTTGCTACTTCTTTCATC
TTTCTGATTGCAATTTATTGTCAGTTTAAAAAAAATATGCATCTTCATAC
TAGAGAAAAACCTTCCAAGTGCAATATCTGTGCAAAAGAATTTACACGAT
CAGGCTTCTTGAAAAATTATCTTCATATTCATACTGATGAGAAACCTTAC
GAGTACGATTGTTGTGGTGAAAAATTTAATTGTTGCTTATAATGATGATG
ATCGCTTTTGTAAAAGATTTGTTTATCATTTCAGAAAACTATCCAGATAT
TGTACCAAGTATTAAAGTTGGCTTGAATTTGTTAAGTGAAGGAAGAATTG
TCCATGAATTGAGTAATTATGCAAAGGAAGAATTAGTCGGACGTTCTATG
TTGTTTTCACTCATTACTAAATTTGAAGAAATTATCGATCAACTTAATGA
AATGTCAATTGAACAAGAATCTTTACAAGACCCTAGCGGTAACTATAATT
ATATAATTATATATAAGAAATAGAGAACTGACTTACAATTGCTACACAGT
GTTTCATGCTGGCGCAATCTTCAGGCAATGCAGGGGTATTATAGATTTTT
TTCAATACACCTGCATTGCCTGAAGATTGCGCCAGCATAAATCACCGTGT
AGCAATTGTAAGTTAGTTCTTTATTTCTTAATATTTCACTCGAATTTTTT
CGAATTTTCTTGAGCACTTTGTGATTCTATTTATTTCACTGTATATTTAT
ATTCGCTTTGTAAACTTATTTTAAACATATACCTGATACCTGATAAGAGT
TACCTAAGAGTTTTAAAGATTTGATGACTTCATTTTTTTTGAAATTTATT
TTAAAATGTTTCTTTAGGGACAGTTGACGCAGTAGACCTGGAAATGTCAT
CTGAAAGCATTGATGGTCCATCTAAAGCTGACTGCAGTTCTGAAACATCC
CCGGGAAACACGTCCACCCTAGCAGAAGNGATGGTCCATCTAAAGCTGAC
TGCAGTTCTGAAACATCCCCGGGAAACACGTACACCCTAGCAGAAGAAGA
TGTTTGCAAGTTCTTTTTGAAAGGCCAATGCAGGTTTGGTGATAAATGCC
GAAACAAGCATCCTGGAGGCAGCCCTTCGAAATCTCAAACATCTAACAAA
AATGATCTTTCCACTGCAAATGAGAAGAAAGGTATGTTTAAAAAACAATT
TTTTTCCAATATCCCCCAAAATGTCACAGATTTATTGCCAAATGGGCTCT
TTCAGAAAATGTTCATACATGGAGGGGTGAAGGATATAGTGTCCATAGTT
TCTAGAGGGGTCAAGACCCCCCCTTAGGTAAGAAGACCCCCCCCCCTTAA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNATTTTGACTTTAAAAGCTCATAAGT
AGAGAACAAATTGGTCAAATTTAAAAAGTGATAGCTCAAATTTTAAGTTA
GGATATCTACTTTCTAAATATCTAAACTTCAAGCACTTTAGGACATTTGT
TCGGCCTCAAGACGTCGAGAAACGTCTGAACTTTTTCGTGGGTCACCCGG
TAGAAACTATGGTGTCTGGGGGATAGTGAAAAATCTACAAAATTTGCCTT
GTACGTGGGGTAAACTTGCTCTGTGGGAGGGTAGTTTTGCTGTTTGAGGG
TAATTTTCATTGTCCAGGGGGTCAACTAATGCTTCTGGAGGGTAAATTTG
CAAAAAATGCTATATCCTCCTCTCTCCATATTTTTTCTGGAAAAGCCCAA
TTCGACACTATTTCAGATTGGTGCTATTTTCTACTCCNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNCCCCCCCCCGTTTATTCGAACCCCCCTGTTTATTT
GGCACCTAAGAGTAAACCTTTAATAGTTGATTCGACAAATAAAATTCATA
ACAAGTTTTTCTCATTAAGGTACCAATAAAAACAAGAAGAAACAAAATCA
ACACTTAGAAACAAAGGAATTTACTCCAAAACATAAAAAAGAAGCATCAA
TCAAAACAAAAGAAACTGACGAAGAAGGAATTAGTACCAAAAAGGTGAAT
ATTTCGTTTTACCACTGTTTTAATGAAACTTGTTAATTTCTCACCAATTT
TCATAGCTGGAGATCCACTTAATGCTTTTGCGATAGACTGGGTGGGGGGA
CTAAGTGGCCTGGTAGTATAATGGTAGTTCTCAATTTTTAGCATTTGCCT
AGAGGAGACGAACTGTAAAACAGTTCACCAGATTGTGTTGTTTTGGAAGG
TAAAAAAAGGATTATGTTGAGTTCTTGTTTTTCATCATAGTTTCAACTCC
AAGTAGCCTTTTTTGTTATTTATGAACACTTTCTTGTTGTTTTTTATTTA
AAAACTAAGAAGGATGCTGATCTTCGGGTTATGTTTTTTCTTATATCGTT
ATTTGTATTTTTTGTGTTTTTATTCCAAAAGGCGACCTTCCCAAATGTTC
CTAGTCTACTTCACTGAAATCAGTGTCGTCCAAAATTATTAAAAAAGAAC
AGGGTGGGCAAAAAACATGTGGCCAGACAAAAATTATGCTACTTGCAGAA
CAATTACTACCATAAAAATCTCTTTTGTTAGTTTGCGCTTGAAACTTTGT
CATAAGTGCTCCCACAAGACACTTTTCTCATGTCCGATAAAATGCATTCC
ACTTAAATTAGGTTTCTCATTACATTCATTTGTTTATAAAAATTTTCAGA
TACATTCTCTTATAAATAACATTTAAAACAAGGGATTTGTAATTTTTTAA
CAAAGAAATTTGGCTGTGGAATGTATTGCTGGAAAGTTGTCTTCGGAGAC
ATGTTCATGTCGTAATAAAAAGACAAAGAGATTAAGTGTTAGAATTTCTA
TGGCACTAATTGCTCTGAAAGTTAAACAAATTTTCTCAGACCACATTTCT
TTTGCCCACCCTGTAGTTCAGCCAGAAGTAGACTCTATTCAACCATTTTC
ATGGAACAGAATTGTACTAGCCCTTTTCAGTTTCCAAAATGTCATTACAA
AAAAAAGCCTTATGTTCTTACATAGTTTGTTCTTATAAAAAAACGTGTAT
TAATTTTATTGATTATAGGCCTCGATGAAAACAGCTACAGATGTTATACA
CCGCATATTGTGGGATGATGCCTTGCCTACCCAAGATTTTATTGTTGGTT
ACCTTGATCGTTTTGTCGGGATAATCGAGAAACCATTCACAGCTTTCTCT
TGGGAGGATATCGCTTCAGTGGATATGAACGTGTTGGCTGTACCAAAACA
CAGGATTCAATATTTCAAATATTTGGATGTTGTGGTTTGGGATAAGAATA
AAAGAATGGATAAGGTATGGATATATTTCCTATCAAGAAATAAAATAGTT
TAACTCTGTAATCATTTTTTCAGTCAAGTGCTCCCTTAAGAGTATGCTTT
TATACAATATTTACTGTTTTGAAGATCAATACGGGAGTAGCTTTTTGTTA
ATTCATGTTTTTTCACTCTGTTAAAGTCAATTTGCTTTAAAGTGTGCTCT
CCTTCTTTTTATTATCATATTCATTCTATTGCTAATTCTCTTCAGGGTAG
CTTTCATATGAAAGTTAAAAGATTGCATTCTTAGAATGAATTTTAGTATT
TTACCAAATATTGCACCAACCGGCATTTCAAATACACGTTTTTTTATAAG
AACTTCTAAAAATGTTAAAGCATTTGGATGTCCTTAACATTTTCCTAGGA
AACTGAGTGTTTTAGAGATTGCAAAGCCTTAAAATGTTCTTAACTTGTTC
TTAAAATTATGACCATCGAAGCCTTATGTTCTTATATAGTTTTTCTTATA
AAGAAAACGTGTATTCTCACTACTAGGTGTTCGGTTCAACTGGCAATTCT
GAAACCATTCTCGACATCATCGATTCCCAATGGAGAGAACAGTCTAGTCA
AAAACAAGAATCGAAGGCTAAAGATGAAAAGAAAAAACAACAGAGGCGAA
CACAAGACAGAGTTCACGATGAAAAGAACAGACCAAATTATTTCCTGTGT
GTACCAATTACAGACCCAGAAATCAGGAAAAATGTAAAAGAGGTTTGTAA
AGAAAAATTGAATTTCTCTGGTCTTTTAAATATGTTTTTTTGTCCAGGTC
TTTTTTTTTTGTCATTAAGGAAATAGTTTTTAGTGACTACAAACGTTTCT
AGAACTACTTTTAAGGCTGACCTTAATAGTAAGCAAATCGGGTTAAATCA
GTAATAAATCATTATGTTAATACATCTCTTTTACCCCCCCCCCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTCCCCCCCCCCCCCCCATCAGCCATTGCTGAAA
CTACTATTTTTGATTTTTAGAATCTATCCGCCACTTTTTGTTTCTTTTCA
ACACATGATCTATTAATAGACCTTTCCATAAATTACGTCACGAACATCAC
TTGCCTCGTATTCAAACAGTTCTGATTAGAAAAGTGATTAGTCTCTTGAG
ACATTAAATGACTTTTTTATGAATAGAAAGTAGTTTTAATAAAATCCGCC
GGGAGTTAATCACCATGGCAATAACTTCAAAACGAGGCAAGTGATGTTCG
TAACGTAATTTATGAAAAGGTCTATTTCTTCTCTCACATCATGCCATAGG
CCCAAGATCATATCACTACATCTGATAATCGGTTGACAGAGATTTCTCAT
GATGCCGACAGACTGCATGTCACATTATGCATGTTCCGTCTAAACACAGA
GGAAGACAAGTCGAAAGCTAAACAAGTTTTACAGTCGGTAACACCACTTC
TACCCTGCCTTGTACCATTGAATTCATACAAATTTGACGTCAAATATACC
GATCATTTTAACCGTCGTGTGGTTTATGCCGGAGTTTATCCATCACCGGA
ATTATTGAAACTACAAGACATTATTGTGACCAAGCTGAAAAACGCTGGCA
TTCATTTATGTGGAAATCACGACGAATTTACACCGCATTTGACCATGCTA
AAAATCACCCGACCTTTTATGAAAGATAATGATATCAACGAAATCAATCC
TTTTGTATTCAATAAAATCAAGCAAAAAACATTCGGTAAACAACAAGTTT
CCGCATTACGGATATGTGAAACTGGACCGGAAAGAGGCGCTGATAATTTT
TATGTAACTCTAACACGCATTGAAAATTCTTTGTTATCTATATCGGATTC
TCTACCACAGTTAGTTGCTAACAACTTGACAAACCAAATGAGCCAAGGAA
TCATTGATGAAGGCTTAGGAGATTCCCTGCTTTGTGGAATTATCTCTGCA
GAAAGGGATTCCTTCGAAAAAGAAACGTCAATCATGGAACGATGTCTTAT
CGAATCTAGTTGGGAATCCACTAAGAAAATGATCATTTTGAGGGGACTTC
CTGGCTCTGGGAAATCTGAAATTGCCAAAAAACTGATGCAGGGTCATCAA
AGCTGTAAGACGTTTTCGGCGGATGGTTATTTTACAGAACAAGCTGTCGC
TTTGAACACAGATTACAAATTTGTTGGCAAGGAGATTGATGCTGCTCACA
AGTATTGCCGTGACCGAGTAATCGAGGCAATTCAAAATGGTACCGAAGTA
GTAATAATTGATAATACTCACTCGCAACGGTGGGAATACCGTATTTACGA
GCGATTAGCCATTCTATGTGGGTTCAAAAGTCATGTTGTGGAAATCGAAT
GCTCTAATGATTCTACGAGACAGGATTTCCAAAAACGTTGTATACACCAC
GTGACTGACCACGTGCACAAAGAGATGTACACGCGTTGGGAACATGATCC
TCAAGCAATCATGACTTCACAACGTGATCAAGAGCGTCTCAGTCTTGACT
GGATCACCGACCATCGTGACCGCCCAATTCTTTATTCTGCACTATTCTTG
GATCAAAAATCGAAAGATTTATTGAAAATGACCCGCCCGCCGACTATGAG
TCGTATCCATTCCGACCACATGACGTTGATGTATGACCCTACCATGGAAC
ATCTAGAAAAGTTACCGGTTGGGACACCTTTCCGGATTGAGCTATCAGGT
TTGTTACGATTTTGTATTAAAGGGAAGCGGCCGTAGCATGAAGGTAGAGA
TTCCAAGGTTGTGGGTTCAATAGACTTTATCGGAGTTTTTGATTTTTCTA
AAAAAGCGATGCATTGTGGGATTGTTTCGAGTGTATAACCATTGAGTTTA
AAGCCCGAAGGGCTAGAGTAGAATCTCTAACCTTTCTCAGGCAAGAAAAA
GTGAAGCCTTGAAAAAATGCGCAGCCTTAAAAAATGCGCCGTATTTTTGA
CGACAGATTGAATCTAGCAATTCCTTTGTTTACGATTGATATTTTTTCGA
AATTTAGCGGTAAATTTTAGTTTCAATCCGTCATTTGTGTAAAAACCAGG
CGAGCCGCTCAAGGCCGTGCAACTTTGGTAGGATTTGTTGCCTTTAAATG
CACCACCCAGTGGTGCATATCATGAATTGGTTAGCATCAATCAGGTCGAA
CTTTAAATTCATTTCTTGGCTTTTTGGACCTACCCCGGTGGAGGTCCTAT
AAATTAACCTCTGTTCGTTAGTTCGTTGGCCCGTTCGTCCGTTAGTTCGT
TACCAACTTTTCTCGAGATTGGCTCATTGCCCAAAACTGTGCCGAGTCCG
ATTTTTGAGAAAAAAAATTTCTCCGGTTGAAAATGCCGGAAATCGCTGTT
TTTGAAGATTTTCATTAGATTTTTTCCTTGTATTTCTATGTTTTTCACAC
AAAAACATTATTCATAACAATGCTCACCATCAAGCATGATTCAATTGTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTCGCTAAACGCTATATTTTCTGACTGATTTTTTTCTTCTCGCATTGC
TATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTTTT
TCAGGATATGCTGGCAACAACAAAGCACAAGCGATGTCAGTCATCGAAAT
TGAGGACCAAAAATTATGCATGAGCAACCATCCACATGTTACCATAGCAA
CCAATAAAGGTTTTAGACCTGGTTAGTTACCTGTAATTACTTTGTTATAT
TTATTGGAACGTAGTTACCGTATTACTTCGTTTATTATTTTTTTGAGTTT
TAGGAGGGGTGTTTATTCGAGGGAGGCGTTTAAAAGAATGGGGCGTTCAA
AAGAAGGGGGCGTTTATTAAAGAATTTAGAACCGAGGTAACTTTAATCTT
TATCACCCTAAAACCGTCCCAGTCTGTTTTTGCACTTATAGACAAAAGAA
AAAAAGACATGGACGGTTTTAGGGTGGTAAAACGGACAAAAATGTCCGCG
CGGCAATTGGCGGCTATGGTCGAAAAGGCGTATTAAATTTTCCTAATTAA
TTAAATTTTCTCATTTAAAATAGGTGACGTCGAAAAAATGTTGGATTCTT
ACACATGTCAGAAAGTGGAATGTGACGTCATTTTGACTGGTGTTGTGGGT
GTTCGGGTAGCCATTAATGAGCGGGAAAGCGTCACTTGTATCGATGAGCA
TTATTTCAAAAAGTTATTGGCAAAGCAGGCTGTTACAAAGGTTTGTTTAG
TTTTTTCAAATTTTATATACTAACGACTGATAACAAAGGATGGACTTACA
AGGAGAAAATACAAACTGGTAGATACAAAACTTAAAGGTTTTATTTTTAC
ATAAGTGTTCCCGTTTCATATCAAACACATATTTCATATCAGGGCAGTGT
CTGCCTATTGTTATATTATGCTGATCTAAGCAATCTTGCTCCACACCCCT
GTCAATCCAATGTGAAAAAGCTTGTGAATTAAAAGTGATGAGTAAGCAAA
CGATATCACTCTTATTTAAAGATAAAACCTTTAATTTATGAAAATTATTT
CAATTATTTCTTTTATTTTACTGATTTTACATCATATCATATATTATAGA
CTAGGCGGCCTGGAACAATTTAAGAACTTAAGATGAGTGAATTTTAAGCA
AATGAACGGCTCAAAATATCTTTTAAAAAAGGATATAGTTATAAAGCCTA
AATGTTTCAAAAATGTGCCAAAAAATATGAATAACATAAGAAAAAATTTG
GGGTTAAATTACTGTGAAATAAGCCAAACCCCTAAGTACAAAAGTTTAAT
ACTCTTTCTTATAAAAATATGCAACGTATCAAAAATATAAATTAATCGCT
ACTCAAGACTTTTGTCCGTAAACAATAAATTTGAAATGAAAACCACGCAT
TAAACGAGATTTGATTTTGATGGTAACATGGTCTTGATCGACCCCGCCAC
TGATTCTATGGGCGTCGCCGCCCGTATCATCGTCCCACTCATCATACGCC
AAGACAGATGTGATTCTTTCACCTTTGACAACAAAAGAGGAAATACTTTA
CACTTTTTTTTAATAAGAGTTATTTGCCTAAATATGTTCTTGAAATGTTC
TTAATTTCATCATTTTTGTTAAATTTCCTAAGAAACTGGGTATTTTAGAC
TCCATAAAGCCTTTAAATGTTCTTCACATGTTCTGAATATTTCAGCCATC
GAAGCCTTATGTTTTTATATAGTTTGTTCCTATAAAAAATATATACCTGA
ATTTTTTTGATATTCAAATTCATGTTTTACATATGCCGCATTGTGCCCTT
TTCGTATTTCTTCTTCGTAAAGAATGACGTCATTTTTACCAGGATTTCCA
AGGGTTAAATTATGTCTTCCATTACCTGCTGATAACTCTTGCCATTTACC
TGTGTAAATAGATAGATAGAACAAAACTTAAAAGACGTAATTTTTATGAT
TTATCCTTTTGTAGTGTATCTTATCAATTTTAGGGTAAAAGAGTAAACTT
CAGGCTTGATTTTACTTAAAGTTTTCCCCAAGGGCCTCATTGGGATACTC
TGAGTATGTTAAATCTACATAAAATTTTGTTTTCTACGGTACCGAGCAAG
ATAGTGCGCAATTTTTTCAAGGTTTACCCCTGTTTATAAAAAACGTATAC
TTGCCATTTACCTAGAATTTTACTTGCTTTATCCATGACTTTTTCAACAT
TGTCAATTATCGCTATAGCAGCGAATATCTGTTCAGCCATTTTTTTTTAT
GTATTGTTAGCAATTTATCTCTTTACTAGGAGTTGATTGCCAAGCTGTTT
TAATGCGTCAGGGCCTCAAACAAGAAGTTCCGGCTCAAGCACGAATCTCT
CTGTATTTCGAACGGATGTTATTCCCCGTTCGAGTTCGAATACACTTTTC
TCGAGATGCATAAATTTATTGTTGTCCTCGTTTTCAAACAGATTTCATTG
CTCTAAAATTACAAATTCACAATGATAATTGTGTTGTTTACACCTCATGA
TACATTTTGAATTTCAAGTACTTTTGTTTTAGAGTAAATGTTTGCCTTTT
GGGAATTTAAATTGGTTTAAATGTATAATTTTATAGCAATGAAATCTGTT
TGAAAACGAGGACAACAATAAATTTATGCATCTCGAGAAAAGTGTATTAG
CGAGATTCAACTTGAATACCAACTCTGATCTGAAGTTTTGCGACTTTCCA
CCTTTATTGTTCTCTTGTCTGACTCGTTTGAAAGTTCAAATGTTTGAAGG
GCTATTTATATGGCACTTCAATAAGCAAAGCGCATATACAATGTTAATTT
CTTGGAATGTTTATGTACGTCAAGCATCTCAATATAAACAAACATAATTG
TCAGTTTTTGTTTACTCAACAGATTTAAGGTGGATTAAAAACACTCCTGG
AACTATTTTAATAAATGTTTGCATACACTTTTTTTTATAAGAATAGTGTA
AATCCATTTCATCATTGATATTCTTAACTATTTTGGGAAAACCATCCTAA
AATATTCTTACAGCATTCTTATGTTTGGATCCTAATTCAGACTAGATTTA
ACATGTATAGTACATACGTCCGAAGCATAAAATGGTATTTTTGTGAAAGG
AGTGGCCCTATATGGGGTAATTGACAATTTCTAATTGAAAATACTCTAAA
AATGGCATTCTTAAGCTTGAGTAGCAAAATTCCATGATGGTGATATTCTT
AGCATATATTTTTTTGGTCATTTCAAGTGTTTTCTTATAAAAAAGCGTGT
ATATTCATACAGTAAATCATCTCAATATAAACAAACATAATTGTCAGTTT
TGGTTTACTCAACATATTTAAGGTGGATTAAAAACACTCCTGGAAAACAT
TTTCATAAATGTGTACGTGCATATATTCATGTAGTGAATCGTTGAAAATT
TTCCTGTTTGTCTGTGCGTCATTTTAGTTCCAAGAAAGCTTTTTTTTTTT
TACCCACCCCATTAAGTCTTGACGAAATTTAGAGTCATGTCTCCTTTATG
TAGGATTTGAAGCTACTTACTTTCTACATAAGTTGTGCGGCCCGCGTGGT
TTTCATACAAACGCTGACATTTACCGTCGGAATTTGAAAAAAGTTTAAAA
CAAAGAAAGTGATAGATTCAATCTGTTTCAAAATGCGGCGCAAATTTTTT
GAAATTTCTTCAAATCGTTTTAGAAAACTTGAAGATTCGCCGATAGCTTT
CAGCTTGAAACTCAATGAGTCACATTTATTAAGTTTAAAACCCGAAGGGC
TAGAGTAGAATTTCTAACCTATCCCAGGCAAGAAAAAGTGAAGCCACTTG
TTTCCCATCCAGACCGCACCGCGCTCATGACGACGGATTGTATCTAGCGG
TTCCTTTGTTTTGAGAACAATTCAAAAACTTGAGATGACTGGATTTTAAG
CAAATGAACGGCTCAAATGATCTTTTAAAAAAAGGATGTAGCTATAAAAC
CTAAATGTTTCAAAAAATGTGCCAAAAAATATGAATAACATAAGAAGAAA
TTAGGGGGTCAAACTACTGTAAAAAAAGAAACCCCTAGGTACAAAAGTTT
ACTCTTATTATAAAAATATGTAACGTATCAAAAGATAAATTAATCGCTAC
TCAAGACTTTTGTCCGTAAACAATAAATTTGAAATGAAAACCACGCATAA
ATCGAGATTTGATTTTGATGGTAACATGGTCTTGATTGACTCCGCCACTG
ATCCTTTGGGCGTCACCGCCCGTATCATCGCTCCACTCATCATACGCCAA
GACAGATGTGATTCTTTCACCTGTCACAAAAAAGAAAATTCTTTACTGTC
TCAGAAAAACCCTCGTCAAAGGGTTAACATGTTCTTATTTTCATCGTTTT
CTGATTATTTTTGTCCATTTTCCTAAGAAATCGGGTGTTTTAGAGTCCGC
GAAGCCTTAAAATGTCCTTAATTTGTTTTTAATATTTTGGCCATCGAAGC
CTTATGTTCTTATAGTTTGTTCTTATACAAAAGAAACGCGTAGACGACTA
ATTCAGACACAACAGAAATTAAGCAAAACTAATTGAAGGAACGAATTACA
CAAACTGATATTATCCCGTTATGATTTTCTTATTATTATGTAACACCAAT
ATTACTTTATTATAAACGACTCTCAAGTCTACACTTCCAACATAAATGTT
TTCCAGAGCTTTCAGGGGTCTAATTCAGGCTTGGCGAACGGTGAAATTCG
CAAAAATTACAATACTACTTTTTATGGTTAGCTGCTTCGTCTAAAAAGTC
ACCAAAATTTTGAGTAAACAAACCATCCCATTGGCTAAAAGCAAAAACAT
AAACAAAAAAATAGAGTAAGAGCACAGAAAGCACATTTTTCTCATACTAT
GCACATATTTTTGTTTATGTTTTTGCTTTTAGCCAATGGGATGGTTTGTT
TACTCGAAATTTTAGTGATTTTTTATACGAAACGGCTAATCGGAAAAAGG
TGTATTCGAAAGGAAAGTATTAACAGTTCTTCCGGCTTTTCAGCCTTAAA
ATTTAGTAAAATTCATCAAAACATTGAAAATATTGGTTAATATGTTGTGT
TGAGTCTATTTTCAAGCATTTATTTATTTATACCTGAATTTTTTTGATAT
TCAAATTCATGTGTCACATGTGACATACTACTCCCTTTTCGTACTTTTTC
TTCGTAAAGGATGACGTCATTTTTACCAGGATTTCCAAGGGTTAAATTAT
GCCTTCCGTTACCTGCTGATAACTCTTGCCATTTACCTATAGATAGATAG
AACAAAACTTAAACAAAATTATAATTAAAAAATTATGAAATTATAGAGAG
TATTTTACGACTTTCCTTTGACGAGGGACTAAGAATTAAAAGTTCGAATT
ATAGAAAGATCCTCGAATAATGGAAGTTCGAATTAACGAGTGTTCACTGT
ACCAGTATAAACATGTAAATACAAAAACATACAAAATATTTTGATTTTTG
GGACCTGGGGACAAGTTTTTTACCAAAAATTATTGGACTTAGCCTATCAA
TTTTACAATTGGGCCTACAAGTTGTAAAATCTCTATCGTCAAATTAAAAA
TTGTTAAGGGTTATTGCTGCTCACCAAAATTAGTTCCCTACAGGTAGCTT
ATAGTTATATTTACCTAGAATATTTTTTGTTTTATCCATGATTTGACCAG
CACCATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023151XLOC_023151Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038583-exon-sc0001885-1575043694:28068..28241TCONS_00038583-exon-sc0001885-1575043694:28068..28241Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:27554..27757TCONS_00038583-exon-sc0001885-1575043694:27554..27757Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:26861..27174TCONS_00038583-exon-sc0001885-1575043694:26861..27174Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:24848..24972TCONS_00038583-exon-sc0001885-1575043694:24848..24972Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:23578..23823TCONS_00038583-exon-sc0001885-1575043694:23578..23823Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:22850..23065TCONS_00038583-exon-sc0001885-1575043694:22850..23065Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:20844..22242TCONS_00038583-exon-sc0001885-1575043694:20844..22242Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:19821..19937TCONS_00038583-exon-sc0001885-1575043694:19821..19937Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:19302..19468TCONS_00038583-exon-sc0001885-1575043694:19302..19468Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1575043694:14382..14423TCONS_00038583-exon-sc0001885-1575043694:14382..14423Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:28068..28241TCONS_00038583-exon-sc0001885-1510915933:28068..28241Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:27554..27757TCONS_00038583-exon-sc0001885-1510915933:27554..27757Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:26861..27174TCONS_00038583-exon-sc0001885-1510915933:26861..27174Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:24848..24972TCONS_00038583-exon-sc0001885-1510915933:24848..24972Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:23578..23823TCONS_00038583-exon-sc0001885-1510915933:23578..23823Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:22850..23065TCONS_00038583-exon-sc0001885-1510915933:22850..23065Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:20844..22242TCONS_00038583-exon-sc0001885-1510915933:20844..22242Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:19821..19937TCONS_00038583-exon-sc0001885-1510915933:19821..19937Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:19302..19468TCONS_00038583-exon-sc0001885-1510915933:19302..19468Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1510915933:14382..14423TCONS_00038583-exon-sc0001885-1510915933:14382..14423Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:28068..28241TCONS_00038583-exon-sc0001885-1491911889:28068..28241Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:27554..27757TCONS_00038583-exon-sc0001885-1491911889:27554..27757Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:26861..27174TCONS_00038583-exon-sc0001885-1491911889:26861..27174Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:24848..24972TCONS_00038583-exon-sc0001885-1491911889:24848..24972Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:23578..23823TCONS_00038583-exon-sc0001885-1491911889:23578..23823Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:22850..23065TCONS_00038583-exon-sc0001885-1491911889:22850..23065Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:20844..22242TCONS_00038583-exon-sc0001885-1491911889:20844..22242Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:19821..19937TCONS_00038583-exon-sc0001885-1491911889:19821..19937Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:19302..19468TCONS_00038583-exon-sc0001885-1491911889:19302..19468Clytia hemisphaericaexon
TCONS_00038583-exon-sc0001885-1491911889:14382..14423TCONS_00038583-exon-sc0001885-1491911889:14382..14423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001885supercontigsc0001885:14382..28241 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.588011	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.137413	0	0	0	0	0
Blast
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BLAST of TCONS_00038583 vs. Swiss-Prot (Human)
Match: LENG9 (Leukocyte receptor cluster member 9 OS=Homo sapiens GN=LENG9 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.457e-28
Identity = 64/183 (34.97%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  566 CKFFLKGQCRFGDKCRNKHPGGSPSKSQTSNKNDLSTAXXXXXXXXXXXXXXQHLETKEFTPKHKKEASIKTKETDEEGISTKKASMKTATDVIHRILWDDALPTQDFIVGYLDRFVGIIEKPFTAFSW-EDIASVDMNVLAVPKHRIQYFKYLDVVVWDKNKRMDKVFGS---TGNSETILD 1102
            C+FFL+G+CRFG +CR  H                                                 +   +E   E    KK  ++TA DVI RI WD  L   DF VGY+DRF+G+ E+PF+AF W + +A++   VLAVP+HR+++F++   +VWD+  R D VFGS    G   TILD
Sbjct:   46 CRFFLEGRCRFGARCRQPH---------------------------------------------PGAPAPPGREAQPE-AGAKKPPLRTAADVIQRIRWDPRLDPADFSVGYVDRFLGVREEPFSAFCWDQPLAALGPGVLAVPQHRVRFFRFHGRLVWDRASRTDLVFGSGSAAGRGPTILD 182
The following BLAST results are available for this feature:
BLAST of TCONS_00038583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LENG91.457e-2834.97Leukocyte receptor cluster member 9 OS=Homo sapien... [more]
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