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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038582 ID=TCONS_00038582|Name=TCONS_00038582|organism=Clytia hemisphaerica|type=transcript|length=5562bpRun BLAST on NCBI protein sequence of TCONS_00038582-protein >TCONS_00038582-protein ID=TCONS_00038582-protein|Name=TCONS_00038582-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1305bp MKTATDVIHRILWDDALPTQDFIVGYLDRFVGIIEKPFTAFSWEDIASVDRun BLAST on NCBI transcript from alignment at sc0001885:7906..28241- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00038582 ID=TCONS_00038582|Name=TCONS_00038582|organism=Clytia hemisphaerica|type=transcript|length=20336bp|location=Sequence derived from alignment at sc0001885:7906..28241- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0001885:7906..28241- >TCONS_00038582 ID=TCONS_00038582|Name=TCONS_00038582|organism=Clytia hemisphaerica|type=CDS|length=27426bp|location=Sequence derived from alignment at sc0001885:7906..28241- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00038582 vs. Swiss-Prot (Human)
Match: LENG9 (Leukocyte receptor cluster member 9 OS=Homo sapiens GN=LENG9 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 3.607e-28 Identity = 64/183 (34.97%), Postives = 89/183 (48.63%), Query Frame = 2
Query: 566 CKFFLKGQCRFGDKCRNKHPGGSPSKSQTSNKNDLSTAXXXXXXXXXXXXXXQHLETKEFTPKHKKEASIKTKETDEEGISTKKASMKTATDVIHRILWDDALPTQDFIVGYLDRFVGIIEKPFTAFSW-EDIASVDMNVLAVPKHRIQYFKYLDVVVWDKNKRMDKVFGS---TGNSETILD 1102
C+FFL+G+CRFG +CR H + +E E KK ++TA DVI RI WD L DF VGY+DRF+G+ E+PF+AF W + +A++ VLAVP+HR+++F++ +VWD+ R D VFGS G TILD
Sbjct: 46 CRFFLEGRCRFGARCRQPH---------------------------------------------PGAPAPPGREAQPE-AGAKKPPLRTAADVIQRIRWDPRLDPADFSVGYVDRFLGVREEPFSAFCWDQPLAALGPGVLAVPQHRVRFFRFHGRLVWDRASRTDLVFGSGSAAGRGPTILD 182 The following BLAST results are available for this feature:
BLAST of TCONS_00038582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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