TCONS_00038567 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038567
Unique NameTCONS_00038567
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1014

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038567 ID=TCONS_00038567|Name=TCONS_00038567|organism=Clytia hemisphaerica|type=transcript|length=1014bp
ACATGACATAATGAAATTGAGGACTTGGGTGGACATAAAGCAAAGGTCGA
AAAGAAACGCAAAAGAGACGTCAACGCCAGGGCAAAGACAATAATTGCCA
AGGCGAAGGAATTTACATGTCCAACTGTGGCACAATCACCGTCCGTGTAA
AGACTGTCTACGGACGTACTTATGAATTCTCAGAACAGACCATACGTCCA
CCCGCCCAATCCATAGATAACGGAAACGACGCTTCCATAGCATAATCTTT
TAATTCAACACTTGACAATTCCACTCCTACCACGACACCTGCCACGAAAC
CTGACAATTCCGCACCTGCCACGACACCTGCCACGACATCTGGTACGACA
CCTGCCAAGACAGCTGACAATTCCACACCCTTCACGACACCTGGCAATTC
CATATCTGCCACGACATCTGAGGATTCCACACCTGCCACGACACCTGACG
ATTCCACACCTGCCCCGACACCTGACAATTCCACCCCTGCTACGACACTT
GACAATTCTACACCTTGTACCTCTGCAAATAATCTCCAACATTCGCCGAC
AAAAAGACAAGCAAAACGTTCCATACTCCCATTGAATCTTGCGGCAGACA
TGCCCAAAATTCAAAGATTACCAGGAAAAAAACGGTCACAAAAAGAACCT
TGACAAAGTGTCACAGTCGTTGCGAAGTTTGCAAGACAGTATACCTTCCC
CCAAAAGACAGGCAATTTACAAGGGACTTCGGGATCAATAACCGCTATAT
CGCATGTGATGGGGACAATAAAACATGTACTTACTGAGCCCACATAAGGT
GTGTGGGGAAAAATATAACCAGGACAAagcaaattgaaaaaatctactTC
TTCTGCCCCCACTCACCTTGATAGCGAAAACGTGCTCATGGAGAATGAAA
ACGAAccaatagaaaaagaaaaaggccAACAAGTGATAGAAAACGAAgat
ggaaaaagaaaatcaactaGAAAAAGACGAACACGAACGGCAATAacata
aaatgatatttttc
Run BLAST on NCBI

transcript from alignment at sc0001884:21748..25883-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038567 ID=TCONS_00038567|Name=TCONS_00038567|organism=Clytia hemisphaerica|type=transcript|length=4136bp|location=Sequence derived from alignment at sc0001884:21748..25883- (Clytia hemisphaerica)
ACATGACATAATGAAATTGAGGACTTGGGTATGACCAGTTTCCAAATAAT
GCTCTTTCTTATATTTGGCTTATAATATAATCCAATGTCTCACCGAGCTT
ATAGCCATAAACTAGGCCTTGCAAAAAAGTCTGTGTTTCCATTATCTGTA
GGACGCAAAAACAGGCTCCAATAGGAATCATAGGCTGTGTGTAACGTTTA
AAATATTTGGGTACTTCAAAGTATTTCTATATTTCATTGTAGGTGGACAT
AAAGCAAAGGTCGAAAAGAAACGCAAAAGAGACGTCAACGCCAGGGCAAA
GACAATAATTGCCAAGGTGAGGGATGTGATTTTTGGACCTACCGGGAGGT
CCTTTAATTTGACCGTTGTCCGTTCGTCTGTTACAAGCTTTTCTCGGGAT
TGGCTCATTATTTTTTTTTATTTTTTTGCACACTGATACAAAATGGCAAT
GCCTGAAAAGTGACGGAGCCCGATTTTTGAAAAAAAATTTTGGGGGGCAA
ATTTGGGCCAAAAACTACCTAAAAATAAGGTTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGAAGTAATTTTTCTCGGAAAATTTTTTTTCGTCGTCAAATACGGAT
TTTCGCTTTTTTGGGGAAATTCCCTTTTACCATTTTCCTGTTAGCAGCTT
TTCTCGGGATTTGCTCATTAGTTTTTTTTAATTTTTTCCACAATGATACA
AAATAGCAATGCCTGAAAAGTGACGGAGCCTGATTTTTGAAAAAAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCGTC
GTCAAATACGGATTTTCGCAAATTTGGGCCAAAAACTACCTAAAAATAAG
GTTTTTTGGACTTGGTGCAAAATTGCTTCATTAGTTTTTCCTGATTTTTC
GCAGAAAGATGTAGTGCAAGGCAGGCACCCTAAAATGTGGCTGAAGTAAT
TTTTCTCGGAAAATTCTTTTTCGTCGTAAAATACGAATTTTCTTTTTTGG
GGGAAATTCTGTTTTACCATTTTCCTGTTAGCAGCTTTTTCTCGGGATCG
GCTCATTATTCTTTTTTCTTTTTTTGTACAATGATACAAAATAGCAATGC
CTAAAAAGTGACGGAGCCCGATTTTGAAAAAAAAATTTGGGGTAAATTTG
GGCCAAAAACTACCTAAAATAAGGTTTTTTGGACTTTGTGCAAAATTGCT
TCATTAGTTTTTCCTGATTTTTGTCAGAAAGATAGAGTGCAAGGTACCTT
AAAATGTGGCTGAAGTAATTTTTCTCGGAAAATTTTTTTTCGACATAAAA
TTTTCAAAAAAAGACGACCAAGTTACACAATGATAAAAGAAAATAAATCA
GACGTTTTTGCATTGTTCTAAAGACTTATTTTGTTTGCTCAATACCAATA
GTAAAATGTAGAACACCTACTTTTATCTGATTTTGATCAACAGGTAGGTC
CATTCAGCATGTTGCTTGTTTTGTTTATAATAGCAACTCTCCCTATCAAA
AGTAAATATGTATAAACTTACACATGGAATGATTTTTACATTAAAATAGA
CTAGATATAACTATATACATCTCATACGGTCCCATACATAGGTACTCGAA
TACGACAAATATATAGCTAATTTTAAGGCAAAGATTCTGGTTCTGGCATT
TCATCTGGTTTCAATAGTGACTTGTAAAACTCGACGAGAGCATCCTTTTT
TTGGACATTGCCTTGATTTTTTCATAATTTCTGATTGTGTCCCTATCACA
GCCTTCCAGGAGGATTTCTGATCGTGTTTGAAGGTTTGAAGATCTCTAAA
TTATGAATGAAATTTAGATATTAAAACTGTCCCTTATTTTTTATTATAGA
ATTATAGGAATTATCAAAAAAAGGACCATAACAATAATACTAATGCCCTA
ACCTTTGGTTGCAACAATGCTGTAACTATAATGAGAAAGTAAAGGCGTAT
TAGTTACCCAATTGTCATGTTGTTGGGATCAGTTATGGATTTTCTCTCTG
CCTTGGTAGTTGGTACAATTAAGGTTTTTGGAATCGTCTCGTCGGCGAGA
ATTAAGGACGTTTTGTGGCGCATAAGTTTTTCAGTGGTCGATGAAAAAGC
AACTAAATCCTCGTCAAGAATTTCACCTGTGATGCTAACATGTTTGGCAC
CTAAAAAAGTATAAAGTCCTTTAATGCATTTCCGATTGAGGGAACTAGCA
TGCTAAACTGTAAACGTCATTACGCAATCGGAGGATTTCGATGATCTGCT
GATGCACGGCTTTTGGGCCATTTCTTTCATTGATTAGTTGGGTTCATTGT
TACTGTAGGCTATAACTCAGCATATCAACTAAATTTAGATATTTGAACTT
TTTCGTAAACGTATTGAAATCTTACCCCCGTTAAAGTAGTCTTTGGAACT
TATGTGTGCCCGAAACAAAAAANTTTTCGTAAACGTATTGAAATCTTACC
CCCGTTAAAGTAGTCTTTGGAACGTATGTGTGCCCGAAACAAAAAGATAT
CCTCCACATGAGGTTTCCTTTCACGAACGTCTAGTGTTTCTTGGTCTTCT
TCCGAATTATGTACGGACATCGTACCATAAAAGTTAGCACGAACCTGAAG
TTAAAAAGGAAAAAAATTATTTCTTATTTAGGCGAAGGAATTTACATGTC
CAACTGTGGCACAATCACCGTCCGTGTAAAGACTGTCTACGGACGTACTT
ATGAATTCTCAGAACAGGTAGGTGACAATTCTAAAGTGCATAAATCCCTT
AGTTATTAATATCGACAGTTAGAATAAATGACACATTGCAGACATGTTTC
TTTAATGTTCTTGAAATTTGCTACCTCAACAATTTAAACAAAAGAACTCT
ATTTTTCTAGACCATACGTCCACCCGCCCAATCCATAGATAACGGAAACG
ACGCTTCCATAGCATAATCTTTTAATTCAACACTTGACAATTCCACTCCT
ACCACGACACCTGCCACGAAACCTGACAATTCCGCACCTGCCACGACACC
TGCCACGACATCTGGTACGACACCTGCCAAGACAGCTGACAATTCCACAC
CCTTCACGACACCTGGCAATTCCATATCTGCCACGACATCTGAGGATTCC
ACACCTGCCACGACACCTGACGATTCCACACCTGCCCCGACACCTGACAA
TTCCACCCCTGCTACGACACTTGACAATTCTACACCTTGTACCTCTGCAA
ATAATCTCCAACATTCGCCGACAAAAAGACAAGCAAAACGTTCCATACTC
CCATTGAATCTTGCGGCAGACATGCCCAAAATTCAAAGATTACCAGGAAA
AAAACGGTCACAAAAAGAACCTTGACAAAGTGTCACAGTCGTTGCGAAGT
TTGCAAGACAGTATACCTTCCCCCAAAAGACAGGCAATTTACAAGGGACT
TCGGGATCAATAACCGCTATATCGCATGTGATGGGGACAATAAAACATGT
ACTTACTGAGCCCACATAAGGTGTGTGGGGAAAAATATAACCAGGACAAA
GCAAATTGAAAAAATCTACTTCTTCTGCCCCCACTCACCTTGATAGCGAA
AACGTGCTCATGGAGAATGAAAACGAACCAATAGAAAAAGAAAAAGGCCA
ACAAGTGATAGAAAACGAAGATGGAAAAAGAAAATCAACTAGAAAAAGAC
GAACACGAACGGCAATAACATAAAATGATATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023141XLOC_023141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038567-exon-sc0001884-1575043694:25856..25883TCONS_00038567-exon-sc0001884-1575043694:25856..25883Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1575043694:25568..25641TCONS_00038567-exon-sc0001884-1575043694:25568..25641Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1575043694:22717..22802TCONS_00038567-exon-sc0001884-1575043694:22717..22802Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1575043694:21748..22573TCONS_00038567-exon-sc0001884-1575043694:21748..22573Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1510915933:25856..25883TCONS_00038567-exon-sc0001884-1510915933:25856..25883Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1510915933:25568..25641TCONS_00038567-exon-sc0001884-1510915933:25568..25641Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1510915933:22717..22802TCONS_00038567-exon-sc0001884-1510915933:22717..22802Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1510915933:21748..22573TCONS_00038567-exon-sc0001884-1510915933:21748..22573Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1491911889:25856..25883TCONS_00038567-exon-sc0001884-1491911889:25856..25883Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1491911889:25568..25641TCONS_00038567-exon-sc0001884-1491911889:25568..25641Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1491911889:22717..22802TCONS_00038567-exon-sc0001884-1491911889:22717..22802Clytia hemisphaericaexon
TCONS_00038567-exon-sc0001884-1491911889:21748..22573TCONS_00038567-exon-sc0001884-1491911889:21748..22573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001884supercontigsc0001884:21748..25883 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0429769	0.0499003	0	0.237733	0.140895	0.226645	0.212182	0.0742768	0.23001	0.0446506	0.0293515	0.351729	0.547911	0.300305	0.375985	0.0330845	0.237374	0	0.0490243	0.0852221	0.0623525	0.202127	0.0459407	0.66245	0.21115	0	0	0.0489162	0.0996757
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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