TCONS_00038566 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038566
Unique NameTCONS_00038566
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038566 ID=TCONS_00038566|Name=TCONS_00038566|organism=Clytia hemisphaerica|type=transcript|length=1221bp
NCTCGAAGGATATCTTCTCCATCGACGAATGGTGCCAATTGATATATCGG
GCTCGTTTTCTTCAGTGGTTCCTTCTTCTTCAATTGGTTGATGTCGTCAG
GGAAGGCCTTCTGTTGAACTAATCTGATGATAGCTTTCTCTGCTTTCTGT
TTgacttcaacttctgacttttgcCTGTTTGACTTTCGAAGTCGAATCAT
TCTGTATATGATACGTACCATCTTTGACCACGAGTTAGTACGGCTTTCGA
GAACATCAATCAATTCTGGTTGAAGTTTGGACGTTTGAACCTTGGACGTT
TGAACCTTGGATGTTTGAACCTTGACCTTCTTTACTTCTTTGTCGCCATT
TGTCAACTTCAGTACGTTAGGTTGCTTTGGCCATTGTGCTTTGCTCTGAT
AGAGGAAATCGGGTCCCCTAAACCAATGTCTAATCTTTTCGGTTGCTGTC
AGGTTCAAACCTTTCGACGAATGATCGGCTGGGTTTTGTTTGCTTGGGAC
GTAATGCCATTGGTCAAGTTGAGTCTTCTCACGAACAAATTGAGATCTAT
TTGCGACAAATACGTGGAATCGTCTGGTATCATTTGAGATGTAACTCAAT
ACAACTTGAGCGTCGGTCCAGAAATACTCGTCATTGATTGTGGTATCAAG
CTCTCTCTTAAGGAACAATGAAACTTTGACGGATACAACAGCCGCTGATA
GTTCCAAGCGAGGTATTGTAGGTCTTTTCAATGGCGCGACTCTTGATTTT
GATAACACCAGTTGGCAATGAATACTTCCTTTGTCGTTCAAGTACCTGAT
GTAAGATACCTGTCCATAACCTTCCTCCGCCCCATCCGAAAAGTGGTGAA
GGGATATGTTGACGATGGTACCAAAATCTTTTGGCTTCAAGCACCTATGG
ATCTCGAACTGCTCAATGGACTTCAATTGTAATTTCCATTGTTCGAATCG
TTTCAATTGCTGCTTAGTGAGTGGTTCATCCCAACCGTGTTTGTTGGCAC
AAATTTCTTGTAGAATCTTCTTTCCTTCTAACAGGAAGGGTGAGATCAAG
CCCAACGGATCGTACATTGAGCTGACGGTCGACAAAACTCCTCGTCGTGT
TGATGGTTTCTCTTTGAATTGAACTTTGTAGGTGAAcacgtcacgttctg
ggcaccACTGCATGCCCAGGGCTCGTTCGTTGGGTATTGTGTCGGTTGTC
ATATCAAGGTCCTTCAGAGAC
Run BLAST on NCBI

transcript from alignment at sc0001884:6248..7498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038566 ID=TCONS_00038566|Name=TCONS_00038566|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0001884:6248..7498- (Clytia hemisphaerica)
NCTCGAAGGATATCTTCTCCATCGACGAATGGTGCCAATTGATATATCGG
GCTCGTTTTCTTCAGTGGTTCCTTCTTCTTCAATTGGTTGATGTCGTCAG
GGAAGGCCTTCTGTTGAACTAATCTGATGATAGCTTTCTCTGCTTTCTGT
TTGACTTCAACTTCTGACTTTTGCCTGTTTGACTTTCGAAGTCGAATCAT
TCTGTATATGATACGTACCATCTTTGACCACGAGTTAGTACGGCTTTCGA
GAACATCAATCAATTCTGGTTGAAGTTTGGACGTTTGAACCTTGGACGTT
TGAACCTTGGATGTTTGAACATTGGACATTTGAACCTTGGACGTATGCAC
CTTGACCTTCTTTACTTCTTTGTCGCCATTTGTCAACTTCAGTACGTTAG
GTTGCTTTGGCCATTGTGCTTTGCTCTGATAGAGGAAATCGGGTCCCCTA
AACCAATGTCTAATCTTTTCGGTTGCTGTCAGGTTCAAACCTTTCGACGA
ATGATCGGCTGGGTTTTGTTTGCTTGGGACGTAATGCCATTGGTCAAGTT
GAGTCTTCTCACGAACAAATTGAGATCTATTTGCGACAAATACGTGGAAT
CGTCTGGTATCATTTGAGATGTAACTCAATACAACTTGAGCGTCGGTCCA
GAAATACTCGTCATTGATTGTGGTATCAAGCTCTCTCTTAAGGAACAATG
AAACTTTGACGGATACAACAGCCGCTGATAGTTCCAAGCGAGGTATTGTA
GGTCTTTTCAATGGCGCGACTCTTGATTTTGATAACACCAGTTGGCAATG
AATACTTCCTTTGTCGTTCAAGTACCTGATGTAAGATACCTGTCCATAAC
CTTCCTCCGCCCCATCCGAAAAGTGGTGAAGGGATATGTTGACGATGGTA
CCAAAATCTTTTGGCTTCAAGCACCTATGGATCTCGAACTGCTCAATGGA
CTTCAATTGTAATTTCCATTGTTCGAATCGTTTCAATTGCTGCTTAGTGA
GTGGTTCATCCCAACCGTGTTTGTTGGCACAAATTTCTTGTAGAATCTTC
TTTCCTTCTAACAGGAAGGGTGAGATCAAGCCCAACGGATCGTACATTGA
GCTGACGGTCGACAAAACTCCTCGTCGTGTTGATGGTTTCTCTTTGAATT
GAACTTTGTAGGTGAACACGTCACGTTCTGGGCACCACTGCATGCCCAGG
GCTCGTTCGTTGGGTATTGTGTCGGTTGTCATATCAAGGTCCTTCAGAGA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023140XLOC_023140Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038566-exon-sc0001884-1575043694:7179..7498TCONS_00038566-exon-sc0001884-1575043694:7179..7498Clytia hemisphaericaexon
TCONS_00038566-exon-sc0001884-1575043694:6248..7148TCONS_00038566-exon-sc0001884-1575043694:6248..7148Clytia hemisphaericaexon
TCONS_00038566-exon-sc0001884-1510915933:7179..7498TCONS_00038566-exon-sc0001884-1510915933:7179..7498Clytia hemisphaericaexon
TCONS_00038566-exon-sc0001884-1510915933:6248..7148TCONS_00038566-exon-sc0001884-1510915933:6248..7148Clytia hemisphaericaexon
TCONS_00038566-exon-sc0001884-1491911889:7179..7498TCONS_00038566-exon-sc0001884-1491911889:7179..7498Clytia hemisphaericaexon
TCONS_00038566-exon-sc0001884-1491911889:6248..7148TCONS_00038566-exon-sc0001884-1491911889:6248..7148Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001884supercontigsc0001884:6248..7498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54385	1.51376	0.696972	0.428594	1.47914	0.813734	1.72374	1.88861	0	0.53059	0.738729	0.445923	0	0	0.189112	0.187609	0.41399	0.395872	0.354031	0.175485	0.383967	0.229253	0.372318	0.373105	0.246957	0.41532	0.192281	0.0513018	0	0.416259
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038566 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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