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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038565 ID=TCONS_00038565|Name=TCONS_00038565|organism=Clytia hemisphaerica|type=transcript|length=1221bp
GTCTCTGAAGGACCTTGATATGACAACCGACACAATACCCAACGAACGAG
CCCTGGGCATGCAGTggtgcccagaacgtgacgtgTTCACCTACAAAGTT
CAATTCAAAGAGAAACCATCAACACGACGAGGAGTTTTGTCGACCGTCAG
CTCAATGTACGATCCGTTGGGCTTGATCTCACCCTTCCTGTTAGAAGGAA
AGAAGATTCTACAAGAAATTTGTGCCAACAAACACGGTTGGGATGAACCA
CTCACTAAGCAGCAATTGAAACGATTCGAACAATGGAAATTACAATTGAA
GTCCATTGAGCAGTTCGAGATCCATAGGTGCTTGAAGCCAAAAGATTTTG
GTACCATCGTCAACATATCCCTTCACCACTTTTCGGATGGGGCGGAGGAA
GGTTATGGACAGGTATCTTACATCAGGTACTTGAACGACAAAGGAAGTAT
TCATTGCCAACTGGTGTTATCAAAATCAAGAGTCGCGCCATTGAAAAGAC
CTACAATACCTCGCTTGGAACTATCAGCGGCTGTTGTATCCGTCAAAGTT
TCATTGTTCCTTAAGAGAGAGCTTGATACCACAATCAATGACGAGTATTT
CTGGACCGACGCTCAAGTTGTATTGAGTTACATCTCAAATGATACCAGAC
GATTCCACGTATTTGTCGCAAATAGATCTCAATTTGTTCGTGAGAAGACT
CAACTTGACCAATGGCATTACGTCCCAAGCAAACAAAACCCAGCCGATCA
TTCGTCGAAAGGTTTGAACCTGACAGCAACCGAAAAGATTAGACATTGGT
TTAGGGGACCCGATTTCCTCTATCAGAGCAAAGCACAATGGCCAAAGCAA
CCTAACGTACTGAAGTTGACAAATGGCGACAAAGAAGTAAAGAAGGTCAA
GGTGCATACGTCCAAGGTTCAAACGTCCAAGGTTCAAACGTCCAAACTTC
AACCAGAATTGATTGATGTTCTCGAAAGCCGTACTAACTCGTGGTCAAAG
ATGGTACGTATCATATACAGAATGATTCGACTTCGAAAGTCAAACAGgca
aaagtcagaagttgaagtcAAACAGAAAGCAGAGAAAGCTATCATCAGAT
TAGTTCAACAGAAGGCCTTCCCTGACGACATCAACCAATTGAAGAAGAAG
GAACCACTGAAGAAAACGAGCCCGATATATCAATTGGCACCATTCGTCGA
TGGAGAAGATATCCTTCGAGN Run BLAST on NCBI protein sequence of TCONS_00038565-protein >TCONS_00038565-protein ID=TCONS_00038565-protein|Name=TCONS_00038565-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
SLKDLDMTTDTIPNERALGMQWCPERDVFTYKVQFKEKPSTRRGVLSTVS
SMYDPLGLISPFLLEGKKILQEICANKHGWDEPLTKQQLKRFEQWKLQLK
SIEQFEIHRCLKPKDFGTIVNISLHHFSDGAEEGYGQVSYIRYLNDKGSI
HCQLVLSKSRVAPLKRPTIPRLELSAAVVSVKVSLFLKRELDTTINDEYF
WTDAQVVLSYISNDTRRFHVFVANRSQFVREKTQLDQWHYVPSKQNPADH
SSKGLNLTATEKIRHWFRGPDFLYQSKAQWPKQPNVLKLTNGDKEVKKVK
VHTSKVQTSKVQTSKLQPELIDVLESRTNSWSKMVRIIYRMIRLRKSNRQ
KSEVEVKQKAEKAIIRLVQQKAFPDDINQLKKKEPLKKTSPIYQLAPFVD
GEDILR Run BLAST on NCBI transcript from alignment at sc0001884:6248..7498+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038565 ID=TCONS_00038565|Name=TCONS_00038565|organism=Clytia hemisphaerica|type=transcript|length=1251bp|location=Sequence derived from alignment at sc0001884:6248..7498+ (Clytia hemisphaerica)
GTCTCTGAAGGACCTTGATATGACAACCGACACAATACCCAACGAACGAG
CCCTGGGCATGCAGTggtgcccagaacgtgacgtgTTCACCTACAAAGTT
CAATTCAAAGAGAAACCATCAACACGACGAGGAGTTTTGTCGACCGTCAG
CTCAATGTACGATCCGTTGGGCTTGATCTCACCCTTCCTGTTAGAAGGAA
AGAAGATTCTACAAGAAATTTGTGCCAACAAACACGGTTGGGATGAACCA
CTCACTAAGCAGCAATTGAAACGATTCGAACAATGGAAATTACAATTGAA
GTCCATTGAGCAGTTCGAGATCCATAGGTGCTTGAAGCCAAAAGATTTTG
GTACCATCGTCAACATATCCCTTCACCACTTTTCGGATGGGGCGGAGGAA
GGTTATGGACAGGTATCTTACATCAGGTACTTGAACGACAAAGGAAGTAT
TCATTGCCAACTGGTGTTATCAAAATCAAGAGTCGCGCCATTGAAAAGAC
CTACAATACCTCGCTTGGAACTATCAGCGGCTGTTGTATCCGTCAAAGTT
TCATTGTTCCTTAAGAGAGAGCTTGATACCACAATCAATGACGAGTATTT
CTGGACCGACGCTCAAGTTGTATTGAGTTACATCTCAAATGATACCAGAC
GATTCCACGTATTTGTCGCAAATAGATCTCAATTTGTTCGTGAGAAGACT
CAACTTGACCAATGGCATTACGTCCCAAGCAAACAAAACCCAGCCGATCA
TTCGTCGAAAGGTTTGAACCTGACAGCAACCGAAAAGATTAGACATTGGT
TTAGGGGACCCGATTTCCTCTATCAGAGCAAAGCACAATGGCCAAAGCAA
CCTAACGTACTGAAGTTGACAAATGGCGACAAAGAAGTAAAGAAGGTCAA
GGTGCATACGTCCAAGGTTCAAATGTCCAATGTTCAAACATCCAAGGTTC
AAACGTCCAAGGTTCAAACGTCCAAACTTCAACCAGAATTGATTGATGTT
CTCGAAAGCCGTACTAACTCGTGGTCAAAGATGGTACGTATCATATACAG
AATGATTCGACTTCGAAAGTCAAACAGgcaaaagtcagaagttgaagtcA
AACAGAAAGCAGAGAAAGCTATCATCAGATTAGTTCAACAGAAGGCCTTC
CCTGACGACATCAACCAATTGAAGAAGAAGGAACCACTGAAGAAAACGAG
CCCGATATATCAATTGGCACCATTCGTCGATGGAGAAGATATCCTTCGAG
N Coding sequence (CDS) from alignment at sc0001884:6248..7498+ >TCONS_00038565 ID=TCONS_00038565|Name=TCONS_00038565|organism=Clytia hemisphaerica|type=CDS|length=2436bp|location=Sequence derived from alignment at sc0001884:6248..7498+ (Clytia hemisphaerica)
TCTCTGAAGGACCTTGATATGACAACCGACACAATACCCAACGAACGAGC
CCTGGGCATGCAGTggtgcccagaacgtgacgtgTTCACCTACAAAGTTC
AATTCAAAGAGAAACCATCAACACGACGAGGAGTTTTGTCGACCGTCAGC
TCAATGTACGATCCGTTGGGCTTGATCTCACCCTTCCTGTTAGAAGGAAA
GAAGATTCTACAAGAAATTTGTGCCAACAAACACGGTTGGGATGAACCAC
TCACTAAGCAGCAATTGAAACGATTCGAACAATGGAAATTACAATTGAAG
TCCATTGAGCAGTTCGAGATCCATAGGTGCTTGAAGCCAAAAGATTTTGG
TACCATCGTCAACATATCCCTTCACCACTTTTCGGATGGGGCGGAGGAAG
GTTATGGACAGGTATCTTACATCAGGTACTTGAACGACAAAGGAAGTATT
CATTGCCAACTGGTGTTATCAAAATCAAGAGTCGCGCCATTGAAAAGACC
TACAATACCTCGCTTGGAACTATCAGCGGCTGTTGTATCCGTCAAAGTTT
CATTGTTCCTTAAGAGAGAGCTTGATACCACAATCAATGACGAGTATTTC
TGGACCGACGCTCAAGTTGTATTGAGTTACATCTCAAATGATACCAGACG
ATTCCACGTATTTGTCGCAAATAGATCTCAATTTGTTCGTGAGAAGACTC
AACTTGACCAATGGCATTACGTCCCAAGCAAACAAAACCCAGCCGATCAT
TCGTCGAAAGGTTTGAACCTGACAGCAACCGAAAAGATTAGACATTGGTT
TAGGGGACCCGATTTCCTCTATCAGAGCAAAGCACAATGGCCAAAGCAAC
CTAACGTACTGAAGTTGACAAATGGCGACAAAGAAGTAAAGAAGGTCAAG
GTGCATACGTCCAAGGTTCAAACGTCCAAGGTTCAAACGTCCAAACTTCA
ACCAGAATTGATTGATGTTCTCGAAAGCCGTACTAACTCGTGGTCAAAGA
TGGTACGTATCATATACAGAATGATTCGACTTCGAAAGTCAAACAGgcaa
aagtcagaagttgaagtcAAACAGAAAGCAGAGAAAGCTATCATCAGATT
AGTTCAACAGAAGGCCTTCCCTGACGACATCAACCAATTGAAGAAGAAGG
AACCACTGAAGAAAACGAGCCCGATATATCAATTGGCACCATTCGTCGAT
GGAGAAGATATCCTTCGATCTCTGAAGGACCTTGATATGACAACCGACAC
AATACCCAACGAACGAGCCCTGGGCATGCAGTggtgcccagaacgtgacg
tgTTCACCTACAAAGTTCAATTCAAAGAGAAACCATCAACACGACGAGGA
GTTTTGTCGACCGTCAGCTCAATGTACGATCCGTTGGGCTTGATCTCACC
CTTCCTGTTAGAAGGAAAGAAGATTCTACAAGAAATTTGTGCCAACAAAC
ACGGTTGGGATGAACCACTCACTAAGCAGCAATTGAAACGATTCGAACAA
TGGAAATTACAATTGAAGTCCATTGAGCAGTTCGAGATCCATAGGTGCTT
GAAGCCAAAAGATTTTGGTACCATCGTCAACATATCCCTTCACCACTTTT
CGGATGGGGCGGAGGAAGGTTATGGACAGGTATCTTACATCAGGTACTTG
AACGACAAAGGAAGTATTCATTGCCAACTGGTGTTATCAAAATCAAGAGT
CGCGCCATTGAAAAGACCTACAATACCTCGCTTGGAACTATCAGCGGCTG
TTGTATCCGTCAAAGTTTCATTGTTCCTTAAGAGAGAGCTTGATACCACA
ATCAATGACGAGTATTTCTGGACCGACGCTCAAGTTGTATTGAGTTACAT
CTCAAATGATACCAGACGATTCCACGTATTTGTCGCAAATAGATCTCAAT
TTGTTCGTGAGAAGACTCAACTTGACCAATGGCATTACGTCCCAAGCAAA
CAAAACCCAGCCGATCATTCGTCGAAAGGTTTGAACCTGACAGCAACCGA
AAAGATTAGACATTGGTTTAGGGGACCCGATTTCCTCTATCAGAGCAAAG
CACAATGGCCAAAGCAACCTAACGTACTGAAGTTGACAAATGGCGACAAA
GAAGTAAAGAAGGTCAAGGTGCATACGTCCAAGGTTCAAACGTCCAAGGT
TCAAACGTCCAAACTTCAACCAGAATTGATTGATGTTCTCGAAAGCCGTA
CTAACTCGTGGTCAAAGATGGTACGTATCATATACAGAATGATTCGACTT
CGAAAGTCAAACAGgcaaaagtcagaagttgaagtcAAACAGAAAGCAGA
GAAAGCTATCATCAGATTAGTTCAACAGAAGGCCTTCCCTGACGACATCA
ACCAATTGAAGAAGAAGGAACCACTGAAGAAAACGAGCCCGATATATCAA
TTGGCACCATTCGTCGATGGAGAAGATATCCTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038565-exon-sc0001884-1491911889:6248..7163 | TCONS_00038565-exon-sc0001884-1491911889:6248..7163 | Clytia hemisphaerica | exon |
| TCONS_00038565-exon-sc0001884-1510915933:6248..7163 | TCONS_00038565-exon-sc0001884-1510915933:6248..7163 | Clytia hemisphaerica | exon |
| TCONS_00038565-exon-sc0001884-1575043694:6248..7163 | TCONS_00038565-exon-sc0001884-1575043694:6248..7163 | Clytia hemisphaerica | exon |
| TCONS_00038565-exon-sc0001884-1491911889:7194..7498 | TCONS_00038565-exon-sc0001884-1491911889:7194..7498 | Clytia hemisphaerica | exon |
| TCONS_00038565-exon-sc0001884-1510915933:7194..7498 | TCONS_00038565-exon-sc0001884-1510915933:7194..7498 | Clytia hemisphaerica | exon |
| TCONS_00038565-exon-sc0001884-1575043694:7194..7498 | TCONS_00038565-exon-sc0001884-1575043694:7194..7498 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001884 | supercontig | sc0001884:6248..7498 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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