TCONS_00038556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038556
Unique NameTCONS_00038556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038556 ID=TCONS_00038556|Name=TCONS_00038556|organism=Clytia hemisphaerica|type=transcript|length=398bp
AGGGAAATGCTTGATCAATTTGAATATAACATTCACAATTTTCTCACAGA
CGGAGGTATGAAGATTTGAGTGATGAAGAAACAGGAAAAATATCGAAGTT
GGTCAGTCAAAATTCACGAAGACGTCCAAAGTTTTAAAATCGATCGCAAG
CAAAGAAAACagtatgaaatttcaaaaatggaaGCATGGTCactaaagaa
aaagtaaagccaTGACTTCACATCTCATCAAGCCTCCGTAAACCAGTACT
CACATCAATATCATCGAAACGAGAAGGAGTTTACTTTCTATCGAACCATT
ACAGCGTAGATATAAAGGATGCTTAATTATTGACTGGATGGCATAGCCCT
TGGTAatgaaaatcatcatcatcatcatcatccttcgatctAGGTCCG
Run BLAST on NCBI

transcript from alignment at sc0001882:6460..7726-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038556 ID=TCONS_00038556|Name=TCONS_00038556|organism=Clytia hemisphaerica|type=transcript|length=1267bp|location=Sequence derived from alignment at sc0001882:6460..7726- (Clytia hemisphaerica)
AGGGAAATGCTTGATCAATTTGAATATAACATTCACAATTTTCTCACAGA
CGGAGGTATGAAGATTTGAGTGATGAAGAAACAGGTACAGGTCTTTGTAT
AATGTGTTTTTTTAAATAATTTTGAGTTACCAGTAAATTTTGACTCAGCT
CTTCTCTTAATAATTTAAAATTTACTTACAGTACAATGATTTCTATCGCA
TCTAGCCTGGATATCCAGACATTTTTGGACAGTCTAGTTGGAGTATTTTT
ATCTATGGTTCCTCTGCATTCAAATCTGTGGATAAGTGATTGTTCGATGG
TTGCAAGATATAACCTTAGGATGTTGAGGTTCTTTGACAAACAGTTTTTA
ACAAGATGATAGATATTAATCACTTTAAGACTGAAAATGGCTTTAGAGAA
TTAATTGAAACTAGCATCATCTTAAGTATTATCCAGACCTAGTGGAACGA
CCGTAAAATAGGAGGGGCTAAAAGCTAAAATTAGTCAAATTTTGCTAGGA
AATCGAGAAAAAGTATATTTTGATAAAGCAACCAACTTTCCCCAAGCCTG
TCCTCTGTAGCCAATTTACAACTTATAATAGTGGTCACCTGTTCAAGTTG
CACATCTTATAACACAGCATAAAACTATAACCATTCAGTGATATGATATG
ATAAAACAATAGGGAGTAACATGTACCTCATTTGTAATTTTTCGTCTCCT
AGGAAAAATATCGAAGTTGGTCAGTCAAAATTCACGAAGACGTCCAAAGT
TTTAAAATCGATCGCAAGCAAAGAAAACAGTATGAAATTTCAAAAATGGA
AGCATGGTCACTAAAGAAAAAGTAAAGCCATGACTTCACATCTCATCAAG
GTCTCAGATAGTTTCATATAAACTAAATGAAGATCATGATGTCCAAAATC
TGATTGATAAAATGATTTTCTTGAAGTTTATCAGCTACTTTGTTCTCTAT
TTTAATCAGTTTGAATAAATAAACAACATACCTCCCACCACACAATTTTC
ATCTCCCCACCAAGTTTCCATTATTATTACTAAGCAAATTTTTAGATTCA
TTCAAGTGTTTCAAGGTATTAGTATTCATTTGCATTAACTTTAGATTCCA
GCCTCCGTAAACCAGTACTCACATCAATATCATCGAAACGAGAAGGAGTT
TACTTTCTATCGAACCATTACAGCGTAGATATAAAGGATGCTTAATTATT
GACTGGATGGCATAGCCCTTGGTAATGAAAATCATCATCATCATCATCAT
CCTTCGATCTAGGTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023131XLOC_023131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038556-exon-sc0001882-1575043694:7643..7726TCONS_00038556-exon-sc0001882-1575043694:7643..7726Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1575043694:6877..7024TCONS_00038556-exon-sc0001882-1575043694:6877..7024Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1575043694:6460..6625TCONS_00038556-exon-sc0001882-1575043694:6460..6625Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1510915933:7643..7726TCONS_00038556-exon-sc0001882-1510915933:7643..7726Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1510915933:6877..7024TCONS_00038556-exon-sc0001882-1510915933:6877..7024Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1510915933:6460..6625TCONS_00038556-exon-sc0001882-1510915933:6460..6625Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1491911889:7643..7726TCONS_00038556-exon-sc0001882-1491911889:7643..7726Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1491911889:6877..7024TCONS_00038556-exon-sc0001882-1491911889:6877..7024Clytia hemisphaericaexon
TCONS_00038556-exon-sc0001882-1491911889:6460..6625TCONS_00038556-exon-sc0001882-1491911889:6460..6625Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001882supercontigsc0001882:6460..7726 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.359808	0.730286	0	0	1.6463	3.02209	0	0	0	0	1.03002	0	0	0	0	0	0	0.0122573	0	0	0.234113	0	0	0	0	0.775585	0	0	0	0.0659066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top