TCONS_00038550 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038550
Unique NameTCONS_00038550
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038550 ID=TCONS_00038550|Name=TCONS_00038550|organism=Clytia hemisphaerica|type=transcript|length=1043bp
caatgaagtataagcccgaagggctagaagtcaatctctttggtaggatt
tgaagccaacaaataaccaaaaaatatcaatcgtaaacaaaggaattgtt
agattcaatctgtcgtcaaaaatacggcgcattttttaaggcttcacttt
ttcttgcctgagaaaggttagagattgaactctagcccttcgggctttca
ACTCAATGATTGTAGAGTTCATCAACGATCACGAGAAGACCAAAGAGAAA
TAATCAGGAGATTTCAGTGCAACCAGAAGTAGACAACATAAGAACAGAGT
CGGATGAGGAAAACCAATTTATTCCAATCAGAATCGATAGAGGTAATCGC
CAATTTAGACCTATTGGAGAAGAGGAGGAACAGCAGGAGGATTTTCAAGG
CCAGCAGGGTGATCCACGACAGATACAAAATAATTTCGATCCTATTGCCT
TTCAGGATAACCTTATGAACTTTTTACAACGAAGGATCGATCAATCAGAC
GAAAAAAGGGAGAAGGATAATGTATTTATTAAGTCTCAAATGAAAACTAT
TCAAAATAAAAGCTCTCGTGATTTTAAATCAATATCTAATAAATTACAAT
ATAGTTTTACTCAGGATTTGTACGAGTTGAATATTGAGGCTAAAGTTCTT
TTGGAGGCCAACAATAAAGATAAACTGGCATCAGTATTAGACAAGATGGA
GAAGGAATTGTTGAAGCGCCAGAAAATCATTTGTTTGGCTGATCGCTCGG
TAGCTGGTTGGGATTCTGTCCAAGAATATTTGCCCAATGATTTGTTCGAG
GATGGAGATGATGATAGGTGGAGGAAAGCTGAGGGTAGAGCCATCTCAAG
TTTGAAACGAAAGCACCAACAGGACCCTTCCAACAATGTGGTCCCAAACA
AGAAATTCATGTCCCCCCAGTATAACCATGCAGTACAGAATTATCAGTCT
AGACCACAGCTTCCAATACAACNATCAGTCTAGACAACAGCTTCCAATAC
AACACGTGGTTCCGCAACAGCAGCAAGTGTTTATACCTCTACA
Run BLAST on NCBI

protein sequence of TCONS_00038550-protein

>TCONS_00038550-protein ID=TCONS_00038550-protein|Name=TCONS_00038550-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MNFLQRRIDQSDEKREKDNVFIKSQMKTIQNKSSRDFKSISNKLQYSFTQ
DLYELNIEAKVLLEANNKDKLASVLDKMEKELLKRQKIICLADRSVAGWD
SVQEYLPNDLFEDGDDDRWRKAEGRAISSLKRKHQQDPSNNVVPNKKFMS
PQYNHAVQNYQSRPQLPIQXSV
Run BLAST on NCBI

transcript from alignment at sc0001879:13310..14352+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038550 ID=TCONS_00038550|Name=TCONS_00038550|organism=Clytia hemisphaerica|type=transcript|length=1043bp|location=Sequence derived from alignment at sc0001879:13310..14352+ (Clytia hemisphaerica)
caatgaagtataagcccgaagggctagaagtcaatctctttggtaggatt
tgaagccaacaaataaccaaaaaatatcaatcgtaaacaaaggaattgtt
agattcaatctgtcgtcaaaaatacggcgcattttttaaggcttcacttt
ttcttgcctgagaaaggttagagattgaactctagcccttcgggctttca
ACTCAATGATTGTAGAGTTCATCAACGATCACGAGAAGACCAAAGAGAAA
TAATCAGGAGATTTCAGTGCAACCAGAAGTAGACAACATAAGAACAGAGT
CGGATGAGGAAAACCAATTTATTCCAATCAGAATCGATAGAGGTAATCGC
CAATTTAGACCTATTGGAGAAGAGGAGGAACAGCAGGAGGATTTTCAAGG
CCAGCAGGGTGATCCACGACAGATACAAAATAATTTCGATCCTATTGCCT
TTCAGGATAACCTTATGAACTTTTTACAACGAAGGATCGATCAATCAGAC
GAAAAAAGGGAGAAGGATAATGTATTTATTAAGTCTCAAATGAAAACTAT
TCAAAATAAAAGCTCTCGTGATTTTAAATCAATATCTAATAAATTACAAT
ATAGTTTTACTCAGGATTTGTACGAGTTGAATATTGAGGCTAAAGTTCTT
TTGGAGGCCAACAATAAAGATAAACTGGCATCAGTATTAGACAAGATGGA
GAAGGAATTGTTGAAGCGCCAGAAAATCATTTGTTTGGCTGATCGCTCGG
TAGCTGGTTGGGATTCTGTCCAAGAATATTTGCCCAATGATTTGTTCGAG
GATGGAGATGATGATAGGTGGAGGAAAGCTGAGGGTAGAGCCATCTCAAG
TTTGAAACGAAAGCACCAACAGGACCCTTCCAACAATGTGGTCCCAAACA
AGAAATTCATGTCCCCCCAGTATAACCATGCAGTACAGAATTATCAGTCT
AGACCACAGCTTCCAATACAACNATCAGTCTAGACAACAGCTTCCAATAC
AACACGTGGTTCCGCAACAGCAGCAAGTGTTTATACCTCTACA

Coding sequence (CDS) from alignment at sc0001879:13310..14352+

>TCONS_00038550 ID=TCONS_00038550|Name=TCONS_00038550|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0001879:13310..14352+ (Clytia hemisphaerica)
ATGAACTTTTTACAACGAAGGATCGATCAATCAGACGAAAAAAGGGAGAA
GGATAATGTATTTATTAAGTCTCAAATGAAAACTATTCAAAATAAAAGCT
CTCGTGATTTTAAATCAATATCTAATAAATTACAATATAGTTTTACTCAG
GATTTGTACGAGTTGAATATTGAGGCTAAAGTTCTTTTGGAGGCCAACAA
TAAAGATAAACTGGCATCAGTATTAGACAAGATGGAGAAGGAATTGTTGA
AGCGCCAGAAAATCATTTGTTTGGCTGATCGCTCGGTAGCTGGTTGGGAT
TCTGTCCAAGAATATTTGCCCAATGATTTGTTCGAGGATGGAGATGATGA
TAGGTGGAGGAAAGCTGAGGGTAGAGCCATCTCAAGTTTGAAACGAAAGC
ACCAACAGGACCCTTCCAACAATGTGGTCCCAAACAAGAAATTCATGTCC
CCCCAGTATAACCATGCAGTACAGAATTATCAGTCTAGACCACAGCTTCC
AATACAACNATCAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023128XLOC_023128Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038550-proteinTCONS_00038550-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038550-exon-sc0001879-1491911889:13310..14352TCONS_00038550-exon-sc0001879-1491911889:13310..14352Clytia hemisphaericaexon
TCONS_00038550-exon-sc0001879-1510915933:13310..14352TCONS_00038550-exon-sc0001879-1510915933:13310..14352Clytia hemisphaericaexon
TCONS_00038550-exon-sc0001879-1575043694:13310..14352TCONS_00038550-exon-sc0001879-1575043694:13310..14352Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001879supercontigsc0001879:13310..14352 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.5611	20.7969	14.736	9.54364	1.33133	0.612713	3.09699	2.86272	1.10267	1.75138	1.1664	0.846328	1.42671	1.04162	0.980035	0.497483	1.10506	0.853762	0.837977	0.981495	1.27538	1.12117	4.79885	4.29058	1.07833	2.30172	1.5074	0.594137	5.70921	5.54103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038550 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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