TCONS_00038546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038546
Unique NameTCONS_00038546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1079

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038546 ID=TCONS_00038546|Name=TCONS_00038546|organism=Clytia hemisphaerica|type=transcript|length=1079bp
NNCCACGATTCATCTGGAATTTTTGTTGTTGCCAGCGGAGTTGGTTTGGG
TAGCGGTCCAACTACTTGGCATCCATGGCATGATTTGATAAATTCTTCAA
CATCAGGACCCATTCCTGGCCACCATGTCTTAACACGCAATCTTTGCTTG
GTACGAACGATACCCTGGTGGCCCTCGTGAGCGATTTGAATGATGTGTTG
CCTTAACGATTTTGGAATGAAGATTCTGTCATTGAACATGACAACGTTGT
TGACAATGGAGAAACTGTGACGCATAGTGAAGTACTGGCATTTTGGTGAC
ATTTTATTGTTAGTGATGAAATCTATGATACTCTTGATGTCTGGGTCCCT
GTGTTGCTCGTGAGCAATGGTTTCAGCTGAAATAGATTGTGGTAAGGTAT
GTTCATACACATAATTAACAAAATCCTCTGTCACATTACGTTTAACAGTT
ATATGTTTATCATGATTAGATCGAGATAAATAATCAGCTCCATTGAATTT
ACCCGGCTGAtataccattttgaaattgtatggcATGGCTTTGATAACAA
GATTTTCAATGCGGGGTGTGATTGATTTCATTGGGGATGAGAAAATGGGT
ACCAGTGGTTTGTGATCAGTTTTAATAGTAAAATAAAGTCCGTAGAGGTA
TAATCGAAAACGTTCGAGGGCATAAGTAACTGCAAGACATTCACGTTCTA
GTGGGCTGTATCTTCTCTCCACTGGTGATAATGATCTACTTGCATAGCTG
ACTGGTCTCCATGTCCCATTCTTCTGTTTCTGCATGAGGACTGCACCAAG
ACCAACACAAGAAGCATCAGTTGATATTTCTGTCTCTGCATTCACATCGA
AGTAAGCAAGTGTTTCACTGTCAAGTAAAAGTTCCTTCAAACTGTCGAAT
GTACTTTGATGAACGGAGGTCCATTCCCATGTAACGTCCTTTTTTAGTAG
ATTTCTCAGTGGCTCGGTGACGGTAGCAAAATTTGGGAGAAATTTGGAAC
AGTACGTAATCATCCCCAAGAAGCTTCGAAGTTCTTTTATGTTTGTTGGA
GATCAAGTTTGGTGAACAGTTTACAGCCG
Run BLAST on NCBI

transcript from alignment at sc0001878:26..1622-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038546 ID=TCONS_00038546|Name=TCONS_00038546|organism=Clytia hemisphaerica|type=transcript|length=1597bp|location=Sequence derived from alignment at sc0001878:26..1622- (Clytia hemisphaerica)
NNCCACGATTCATCTGGAATTTTTGTTGTTGCCAGCGGAGTTGGTTTGGG
TAGCGGTCCAACTACTTGGCATCCATGGCATGATTTGATAAATTCTTCAA
CATCAGGACCCATTCCTGGCCACCATGTCTTAACACGCAATCTTTGCTTG
GTACGAACGATACCCTGGTGGCCCTCGTGAGCGATTTGAATGATGTGTTG
CCTTAACGATTTTGGAATGAAGATTCTGTCATTGAACATGACAACGTTGT
TGACAATGGAGAAACTGTGACGCATAGTGAAGTACTGGCATTTTGGTGAC
ATTTTATTGTTAGTGATGAAATCTATGATACTCTTGATGTCTGGGTCCCT
GTGTTGCTCGTGAGCAATGGTTTCAGCTGAAATAGATTGTGGTAAGGTAT
GTTCATACACATAATTAACAAAATCCTCTGTCACATTACGTTTAACAGTT
ATATGTTTATCATGATTAGATCGAGATAAATAATCAGCTCCATTGAATTT
ACCCGGCTGATATACCATTTTGAAATTGTATGGCATGGCTTTGATAACAA
GATTTTCAATGCGGGGTGTGATTGATTTCATTGGGGATGAGAAAATGGGT
ACCAGTGGTTTGTGATCAGTTTTAATAGTAAAATAAAGTCCGTAGAGGTA
TAATCGAAAACGTTCGAGGGCATAAGTAACTGCAAGACATTCACGTTCTA
GTGGGCTGTATCTTCTCTCCACTGGTGATAATGATCTACTTGCATAGCTG
ACTGGTCTCCATGTCCCATTCTTCTGTTTCTGCATGAGGACTGCACCAAG
ACCAACACAAGAAGCATCAGTTGATATTTCTGTCTCTGCATTCACATCGA
AGTAAGCAAGTGTTTCACTGTCAAGTAAAAGTTCCTTCAAACTGTCGAAT
GTACTTTGATGAACGGAGGTCCATTCCCATGTAACGTCCTTTTTTAGTAG
ATTTCTCAGTGGCTCGGTGACGGTAGCAAAATTTGGGAGAAATTTGGAAC
AGTACGTAATCATCCCCAAGAAGCTTCGAAGTTCTTTTATGTTTGTTGGA
GGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTCATCTGGTGATACACCAAATTGGGATAATTTGTGTCCCA
TGTAAAGCAGTTCTGTTTTTAGAAAGTTACACTTTTTTGGGTTAACTGTA
AGATTTTTGGTGCGCAGTCTTTCGAATACTGCCTCTGTTCTTGAAATTAG
CTCTTCTTCAGTTCTGCCGCCAATAATAATGTCATCTGAAATGTTTTTAA
CTCCTTGGAGACCAGTGAGTGCTAATTCAATTTCACGTTGGTAGATCTCT
GCTGCAGATGACATTCCAAAAAGAAGGCGAGTGTACCGAAATATACCACG
ATGAGTAGCAAATGCTGTAAGCTCTCTGCTTGCTTTATCTAGTTCGATTT
GATGATAACCTTTGTTTAGATCAAGTTTGGTGAACAGTTTACAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023125XLOC_023125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038546-exon-sc0001878-1575043694:572..1622TCONS_00038546-exon-sc0001878-1575043694:572..1622Clytia hemisphaericaexon
TCONS_00038546-exon-sc0001878-1575043694:26..53TCONS_00038546-exon-sc0001878-1575043694:26..53Clytia hemisphaericaexon
TCONS_00038546-exon-sc0001878-1510915933:572..1622TCONS_00038546-exon-sc0001878-1510915933:572..1622Clytia hemisphaericaexon
TCONS_00038546-exon-sc0001878-1510915933:26..53TCONS_00038546-exon-sc0001878-1510915933:26..53Clytia hemisphaericaexon
TCONS_00038546-exon-sc0001878-1491911889:572..1622TCONS_00038546-exon-sc0001878-1491911889:572..1622Clytia hemisphaericaexon
TCONS_00038546-exon-sc0001878-1491911889:26..53TCONS_00038546-exon-sc0001878-1491911889:26..53Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001878supercontigsc0001878:26..1622 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.507025	0.938539	1.35714	0.936021	5.49163	5.15468	1.95109	2.20771	0.263319	1.55362	4.42419	3.77565	0.614559	2.07398	0.452076	0.456268	0.441742	0.486413	1.58903	1.94941	1.29484	2.32819	0.347879	0.624733	1.78807	1.60376	0.419983	1.64345	0.787252	0.113004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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