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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038544 ID=TCONS_00038544|Name=TCONS_00038544|organism=Clytia hemisphaerica|type=transcript|length=734bp
CCTCCAACAAACATAAAAGAACTTCGAAGCTTCTTGGGGATGATTACGTA
CTGTTCCAAATTTCTCCCAAATTTTGCTACCGTCACCGAGCCACTGAGAA
ATCTACTAAAAAAGGACGTTACATGGGAATGGACCTCCGTTCATCAAAGT
ACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGCTTA
CTTCGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTGTTG
GTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGACCA
GTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATACAGCCC
ACTAGAACCTGAAACCATTGCTCACGAGCAACACAGGGACCCAGACATCA
AGAGTATCATAGATTTCATCACTAACAATAAAATGTCACCAAAATGCCAG
TACTTCACTATGCGTCACAGTTTCTCCATTGTCAACAACGTTGTCATGTT
CAATGACAGAATCTTCATTCCAAAATCGTTAAGGCAACACATCATTCAAA
TCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCAAGCAAAGATTGCGT
GTTAAGACATGGTGGCCAGGAATGGGTCCTGATGTTGAAGAATTTATCAA
ATCATGCCATGGATGCCAAGTAGTTGGACCGCTACCCAAACCAACTCCGC
TGGCAACAACAAAAATTCCAGATGAATCGTGGNN Run BLAST on NCBI protein sequence of TCONS_00038544-protein >TCONS_00038544-protein ID=TCONS_00038544-protein|Name=TCONS_00038544-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
PPTNIKELRSFLGMITYCSKFLPNFATVTEPLRNLLKKDVTWEWTSVHQS
TFDSLKELLLDSETLAYFDVNAETEISTDASCVGLGAVLMQKQKNGTWRP
VSYASRSLSPVERRYSPLEPETIAHEQHRDPDIKSIIDFITNNKMSPKCQ
YFTMRHSFSIVNNVVMFNDRIFIPKSLRQHIIQIAHEGHQGIVRTKQRLR
VKTWWPGMGPDVEEFIKSCHGCQVVGPLPKPTPLATTKIPDESW Run BLAST on NCBI transcript from alignment at sc0001878:571..1622+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038544 ID=TCONS_00038544|Name=TCONS_00038544|organism=Clytia hemisphaerica|type=transcript|length=1052bp|location=Sequence derived from alignment at sc0001878:571..1622+ (Clytia hemisphaerica)
CCTCCAACAAACATAAAAGAACTTCGAAGCTTCTTGGGGATGATTACGTA
CTGTTCCAAATTTCTCCCAAATTTTGCTACCGTCACCGAGCCACTGAGAA
ATCTACTAAAAAAGGACGTTACATGGGAATGGACCTCCGTTCATCAAAGT
ACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGCTTA
CTTCGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTGTTG
GTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGACCA
GTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATACAGCCC
ACTAGAACGTGAATGTCTTGCAGTTACTTATGCCCTCGAACGTTTTCGAT
TATACCTCTACGGACTTTATTTTACTATTAAAACTGATCACAAACCACTG
GTACCCATTTTCTCATCCCCAATGAAATCAATCACACCCCGCATTGAAAA
TCTTGTTATCAAAGCCATgccatacaatttcaaaatggtataTCAGCCGG
GTAAATTCAATGGAGCTGATTATTTATCTCGATCTAATCATGATAAACAT
ATAACTGTTAAACGTAATGTGACAGAGGATTTTGTTAATTATGTGTATGA
ACATACCTTACCACAATCTATTTCAGCTGAAACCATTGCTCACGAGCAAC
ACAGGGACCCAGACATCAAGAGTATCATAGATTTCATCACTAACAATAAA
ATGTCACCAAAATGCCAGTACTTCACTATGCGTCACAGTTTCTCCATTGT
CAACAACGTTGTCATGTTCAATGACAGAATCTTCATTCCAAAATCGTTAA
GGCAACACATCATTCAAATCGCTCACGAGGGCCACCAGGGTATCGTTCGT
ACCAAGCAAAGATTGCGTGTTAAGACATGGTGGCCAGGAATGGGTCCTGA
TGTTGAAGAATTTATCAAATCATGCCATGGATGCCAAGTAGTTGGACCGC
TACCCAAACCAACTCCGCTGGCAACAACAAAAATTCCAGATGAATCGTGG
NN Coding sequence (CDS) from alignment at sc0001878:571..1622+ >TCONS_00038544 ID=TCONS_00038544|Name=TCONS_00038544|organism=Clytia hemisphaerica|type=CDS|length=1464bp|location=Sequence derived from alignment at sc0001878:571..1622+ (Clytia hemisphaerica)
CCTCCAACAAACATAAAAGAACTTCGAAGCTTCTTGGGGATGATTACGTA
CTGTTCCAAATTTCTCCCAAATTTTGCTACCGTCACCGAGCCACTGAGAA
ATCTACTAAAAAAGGACGTTACATGGGAATGGACCTCCGTTCATCAAAGT
ACATTCGACAGTTTGAAGGAACTTTTACTTGACAGTGAAACACTTGCTTA
CTTCGATGTGAATGCAGAGACAGAAATATCAACTGATGCTTCTTGTGTTG
GTCTTGGTGCAGTCCTCATGCAGAAACAGAAGAATGGGACATGGAGACCA
GTCAGCTATGCAAGTAGATCATTATCACCAGTGGAGAGAAGATACAGCCC
ACTAGAACCTGAAACCATTGCTCACGAGCAACACAGGGACCCAGACATCA
AGAGTATCATAGATTTCATCACTAACAATAAAATGTCACCAAAATGCCAG
TACTTCACTATGCGTCACAGTTTCTCCATTGTCAACAACGTTGTCATGTT
CAATGACAGAATCTTCATTCCAAAATCGTTAAGGCAACACATCATTCAAA
TCGCTCACGAGGGCCACCAGGGTATCGTTCGTACCAAGCAAAGATTGCGT
GTTAAGACATGGTGGCCAGGAATGGGTCCTGATGTTGAAGAATTTATCAA
ATCATGCCATGGATGCCAAGTAGTTGGACCGCTACCCAAACCAACTCCGC
TGGCAACAACAAAAATTCCAGATGAATCGTGGCCTCCAACAAACATAAAA
GAACTTCGAAGCTTCTTGGGGATGATTACGTACTGTTCCAAATTTCTCCC
AAATTTTGCTACCGTCACCGAGCCACTGAGAAATCTACTAAAAAAGGACG
TTACATGGGAATGGACCTCCGTTCATCAAAGTACATTCGACAGTTTGAAG
GAACTTTTACTTGACAGTGAAACACTTGCTTACTTCGATGTGAATGCAGA
GACAGAAATATCAACTGATGCTTCTTGTGTTGGTCTTGGTGCAGTCCTCA
TGCAGAAACAGAAGAATGGGACATGGAGACCAGTCAGCTATGCAAGTAGA
TCATTATCACCAGTGGAGAGAAGATACAGCCCACTAGAACCTGAAACCAT
TGCTCACGAGCAACACAGGGACCCAGACATCAAGAGTATCATAGATTTCA
TCACTAACAATAAAATGTCACCAAAATGCCAGTACTTCACTATGCGTCAC
AGTTTCTCCATTGTCAACAACGTTGTCATGTTCAATGACAGAATCTTCAT
TCCAAAATCGTTAAGGCAACACATCATTCAAATCGCTCACGAGGGCCACC
AGGGTATCGTTCGTACCAAGCAAAGATTGCGTGTTAAGACATGGTGGCCA
GGAATGGGTCCTGATGTTGAAGAATTTATCAAATCATGCCATGGATGCCA
AGTAGTTGGACCGCTACCCAAACCAACTCCGCTGGCAACAACAAAAATTC
CAGATGAATCGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038544-exon-sc0001878-1491911889:571..928 | TCONS_00038544-exon-sc0001878-1491911889:571..928 | Clytia hemisphaerica | exon |
| TCONS_00038544-exon-sc0001878-1510915933:571..928 | TCONS_00038544-exon-sc0001878-1510915933:571..928 | Clytia hemisphaerica | exon |
| TCONS_00038544-exon-sc0001878-1575043694:571..928 | TCONS_00038544-exon-sc0001878-1575043694:571..928 | Clytia hemisphaerica | exon |
| TCONS_00038544-exon-sc0001878-1491911889:1247..1622 | TCONS_00038544-exon-sc0001878-1491911889:1247..1622 | Clytia hemisphaerica | exon |
| TCONS_00038544-exon-sc0001878-1510915933:1247..1622 | TCONS_00038544-exon-sc0001878-1510915933:1247..1622 | Clytia hemisphaerica | exon |
| TCONS_00038544-exon-sc0001878-1575043694:1247..1622 | TCONS_00038544-exon-sc0001878-1575043694:1247..1622 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001878 | supercontig | sc0001878:571..1622 + |
Blast
The following BLAST results are available for this feature:
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