TCONS_00038540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038540
Unique NameTCONS_00038540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038540 ID=TCONS_00038540|Name=TCONS_00038540|organism=Clytia hemisphaerica|type=transcript|length=397bp
TTAGATTGTTGAATGATGGATTTCGGTCATTATTACATTTTGAAGGTATC
AATTCCTTTGAAGATATGTCTGCAGCCCAACTGTACATAACAATGAAGGA
CCATCGACTTGCTGAGCCGCTCCAAAAGATGATTTTAAATAGAATGCACA
TGGTGCGTCAAGCTGCACTAGAGGAAGGAATCGAGCTTGACGATATTCCA
GTCGACCAAACAATTAAACCAGTCAATATATATATTTCACAAACCTTTGA
TTCTTTCTGCCGAGAGGAGATCGTTAAAGAATTGCACTGTTTACGGCAAT
TTGACGTCGATTATAATCTTGAAGCAACAGAAAGCCCCGTACCAGTTATT
GTTTCGGCACATCCAAACACCAAACTCGGCCGCGCAGTGGATGTTAT
Run BLAST on NCBI

protein sequence of TCONS_00038540-protein

>TCONS_00038540-protein ID=TCONS_00038540-protein|Name=TCONS_00038540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
RLLNDGFRSLLHFEGINSFEDMSAAQLYITMKDHRLAEPLQKMILNRMHM
VRQAALEEGIELDDIPVDQTIKPVNIYISQTFDSFCREEIVKELHCLRQF
DVDYNLEATESPVPVIVSAHPNTKLGRAVDV
Run BLAST on NCBI

transcript from alignment at sc0001877:30888..31449-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038540 ID=TCONS_00038540|Name=TCONS_00038540|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0001877:30888..31449- (Clytia hemisphaerica)
TTAGATTGTTGAATGATGGATTTCGGTCATTATTACATTTTGAAGGTATC
AATTCCTTTGAAGATATGTCTGCAGCCCAACTGTACATAACAATGAAGGA
CCATCGACTTGCTGAGCCGCTCCAAAAGATGATTTTAAATAGAATGCACA
TGGTGCGTCAAGCTGCACTAGAGGAAGGAATCGAGCTTGACGATATTCCA
GTCGACCAAACAATTAAACCAGTCAATATATATATTTCACAAACCTTTGA
TTCTTTCTGCCGAGAGGAGATCGTTAAAGAATTGCACTGTTTACGGCAAT
TTGACGTCGATTATAATCTTGAAGCAACAGAAAGCCCCGGTAAGGAAACT
TTTAACTGAAAGGTTATTTTTACCAAATTCATGGCCTATTCTTTTGAAAT
GACAGGATGAAGGTTCAACATGAAAATGATTTTCTGATAGTCCCTTTAAT
AACTAAACCTTAGTTTCAAACTTCTAATGTTTAATTTACCTCCTTTATTC
TTAGTACCAGTTATTGTTTCGGCACATCCAAACACCAAACTCGGCCGCGC
AGTGGATGTTAT

Coding sequence (CDS) from alignment at sc0001877:30888..31449-

>TCONS_00038540 ID=TCONS_00038540|Name=TCONS_00038540|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at sc0001877:30888..31449- (Clytia hemisphaerica)
TACCAGTTATTGTTTCGGCACATCCAAACACCAAACTCGGCCGCGCAGTG
GATGTTAGATTGTTGAATGATGGATTTCGGTCATTATTACATTTTGAAGG
TATCAATTCCTTTGAAGATATGTCTGCAGCCCAACTGTACATAACAATGA
AGGACCATCGACTTGCTGAGCCGCTCCAAAAGATGATTTTAAATAGAATG
CACATGGTGCGTCAAGCTGCACTAGAGGAAGGAATCGAGCTTGACGATAT
TCCAGTCGACCAAACAATTAAACCAGTCAATATATATATTTCACAAACCT
TTGATTCTTTCTGCCGAGAGGAGATCGTTAAAGAATTGCACTGTTTACGG
CAATTTGACGTCGATTATAATCTTGAAGCAACAGAAAGCCCCGTACCAGT
TATTGTTTCGGCACATCCAAACACCAAACTCGGCCGCGCAGTGGATGTTA
GATTGTTGAATGATGGATTTCGGTCATTATTACATTTTGAAGGTATCAAT
TCCTTTGAAGATATGTCTGCAGCCCAACTGTACATAACAATGAAGGACCA
TCGACTTGCTGAGCCGCTCCAAAAGATGATTTTAAATAGAATGCACATGG
TGCGTCAAGCTGCACTAGAGGAAGGAATCGAGCTTGACGATATTCCAGTC
GACCAAACAATTAAACCAGTCAATATATATATTTCACAAACCTTTGATTC
TTTCTGCCGAGAGGAGATCGTTAAAGAATTGCACTGTTTACGGCAATTTG
ACGTCGATTATAATCTTGAAGCAACAGAAAGCCCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023120XLOC_023120Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038540-proteinTCONS_00038540-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038540-exon-sc0001877-1575043694:31111..31449TCONS_00038540-exon-sc0001877-1575043694:31111..31449Clytia hemisphaericaexon
TCONS_00038540-exon-sc0001877-1575043694:30888..30945TCONS_00038540-exon-sc0001877-1575043694:30888..30945Clytia hemisphaericaexon
TCONS_00038540-exon-sc0001877-1510915933:31111..31449TCONS_00038540-exon-sc0001877-1510915933:31111..31449Clytia hemisphaericaexon
TCONS_00038540-exon-sc0001877-1510915933:30888..30945TCONS_00038540-exon-sc0001877-1510915933:30888..30945Clytia hemisphaericaexon
TCONS_00038540-exon-sc0001877-1491911889:31111..31449TCONS_00038540-exon-sc0001877-1491911889:31111..31449Clytia hemisphaericaexon
TCONS_00038540-exon-sc0001877-1491911889:30888..30945TCONS_00038540-exon-sc0001877-1491911889:30888..30945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001877supercontigsc0001877:30888..31449 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.508976	0.603299	0.242618	0.227136	0	0	0	0.251361	0.251012	0.459066	0.4977	0.600403	0	0.435606	0	0.209918	0	0	0	0	0.202611	0.904128	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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