TCONS_00038525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038525
Unique NameTCONS_00038525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length495

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038525 ID=TCONS_00038525|Name=TCONS_00038525|organism=Clytia hemisphaerica|type=transcript|length=495bp
ATTAAACACAAGTGGCCGAAAAGGGGGGAGAGCAGAAAGGCACACAGAAT
Atctacatggtattttcagttcttgaaataaaagtgaaaacggcacagac
aaaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTC
TTGAAATAAAAGTGAAAacggcacagacaaaatatgtacaggaactagaa
taaaataaaaatgagtacaCAGCTAAGCTTAAAAGGACAAATCACAAACA
CATAAAATAATACAGCATAAAAATACAAACTAATAACAAAAACATGAGTA
AATACTGAAATGTAAACTGACATTTACAAAAAAGGGCATCACTAAAACCA
TATACGCTggtcataaaaaagaaaaaaggaagcTTCCCAAAAGATGCTGG
GGAGGGTGGTGGAGCAAAAATACAGCAGTCAGCACTAGGCAAATN
Run BLAST on NCBI

transcript from alignment at sc0001874:19929..20423

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038525 ID=TCONS_00038525|Name=TCONS_00038525|organism=Clytia hemisphaerica|type=transcript|length=495bp|location=Sequence derived from alignment at sc0001874:19929..20423 (Clytia hemisphaerica)
NATTTGCCTAGTGCTGACTGCTGTATTTTTGCTCCACCACCCTCCCCAGC
ATCTTTTGGGAAgcttccttttttcttttttatgaccAGCGTATATGGTT
TTAGTGATGCCCTTTTTTGTAAATGTCAGTTTACATTTCAGTATTTACTC
ATGTTTTTGTTATTAGTTTGTATTTTTATGCTGTATTATTTTATGTGTTT
GTGATTTGTCCTTTTAAGCTTAGCTGtgtactcatttttattttattcta
gttcctgtacatattttgtctgtgccgtTTTCACTTTTATTTCAAGAACT
GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatattttgtctg
tgccgttttcacttttatttcaagaactgaaaataccatgtagaTATTCT
GTGTGCCTTTCTGCTCTCCCCCCTTTTCGGCCACTTGTGTTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023108XLOC_023108Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038525-exon-sc0001874-1491911889:19929..20423TCONS_00038525-exon-sc0001874-1491911889:19929..20423Clytia hemisphaericaexon
TCONS_00038525-exon-sc0001874-1510915933:19929..20423TCONS_00038525-exon-sc0001874-1510915933:19929..20423Clytia hemisphaericaexon
TCONS_00038525-exon-sc0001874-1575043694:19929..20423TCONS_00038525-exon-sc0001874-1575043694:19929..20423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001874supercontigsc0001874:19929..20423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570014	0.241933	0.393948	1.63918	6.36968	3.81479	5.90088	8.07626	4.65067	3.18852	1.82099	4.60901	3.43072	5.37946	0	0.302366	0.414206	0	0	0	0.533475	1.05302	0.42176	0	3.05019	7.06648	0.170094	0.363059	0.963786	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top