TCONS_00038524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038524
Unique NameTCONS_00038524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length277

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038524 ID=TCONS_00038524|Name=TCONS_00038524|organism=Clytia hemisphaerica|type=transcript|length=277bp
CCTTCTTGTGCCATGTGGTTTTGAGAGCCCATTATCTCCAGCAAGGACAG
TTGAAGCCTGACCATCGACAAGACAACAATGAATCTTCATATTCATTTAA
CTAATATATTGGCATAATCCAGATCAGCTAAGATAAAGTTTGGGATTATT
TGGACAGTATGtcttcattgtcaaatatattcAGTCTTTTTATAACATCA
TGTCTTCATCTATCGTTCGATCTCATCATGCCCACACTAGCGTTTTCCGC
TTTCCCACAATTGTTTTTGGTTTTAAT
Run BLAST on NCBI

transcript from alignment at sc0001874:19415..19691

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038524 ID=TCONS_00038524|Name=TCONS_00038524|organism=Clytia hemisphaerica|type=transcript|length=277bp|location=Sequence derived from alignment at sc0001874:19415..19691 (Clytia hemisphaerica)
ATTAAAACCAAAAACAATTGTGGGAAAGCGGAAAACGCTAGTGTGGGCAT
GATGAGATCGAACGATAGATGAAGACATGATGTTATAAAAAGACTgaata
tatttgacaatgaagaCATACTGTCCAAATAATCCCAAACTTTATCTTAG
CTGATCTGGATTATGCCAATATATTAGTTAAATGAATATGAAGATTCATT
GTTGTCTTGTCGATGGTCAGGCTTCAACTGTCCTTGCTGGAGATAATGGG
CTCTCAAAACCACATGGCACAAGAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023107XLOC_023107Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038524-exon-sc0001874-1491911889:19415..19691TCONS_00038524-exon-sc0001874-1491911889:19415..19691Clytia hemisphaericaexon
TCONS_00038524-exon-sc0001874-1510915933:19415..19691TCONS_00038524-exon-sc0001874-1510915933:19415..19691Clytia hemisphaericaexon
TCONS_00038524-exon-sc0001874-1575043694:19415..19691TCONS_00038524-exon-sc0001874-1575043694:19415..19691Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001874supercontigsc0001874:19415..19691 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.7598	16.9893	16.746	14.6036	0	1.28642	0	2.18615	1.4936	1.52786	0	0.879424	1.18002	2.03069	0	0.404613	0.806825	0	0.679707	0	2.80977	5.55818	17.7035	16.0968	0	0.541742	2.56667	3.95891	18.4039	12.4585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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