TCONS_00038521 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038521
Unique NameTCONS_00038521
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length607

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038521 ID=TCONS_00038521|Name=TCONS_00038521|organism=Clytia hemisphaerica|type=transcript|length=607bp
GAGAGACATAATGCCACTCTAGGAAACATGATCCACAAAATTGTTGCTGA
TACTCAGTGCTCCATACAGAATGCACTTGTTTGGGCTGTAAGTGCGAAAA
ATTCTTTGTCCAACAACTTGGGATACAGTCCTAATCAACTAGTCTTCTGC
CGTAACCCAAATCTTCCATCCACGTTAACATTTCAGTTACCAGCCCTTCG
AACGAAAACGTCAAGTGAATTTATTGCTGAACATTTGAATGCTCTTCACT
CTGCTAGAAGGGCATTTATCCAAGCTGAATCCAGTAAAAGAATCAAAACA
GCGTTATCACGTCAAACACAAACAACAACGAGCAAAGAGTTTAATAATGG
AGATACAGTCTATTACAAACGAAATTCAGACAAGGACTGGCATGGTCCAG
GTACCATTATCGGAATTGACGGAAAAGTTGTTGTTGTGCGTCACGGAGGA
AGTGTTCTACGAGAAAGTCCATGCCATTTGACGAAAGTAAATAAGGAAAA
GTCGGAATCATTACCAAAGGAGATACTTATCGTACCAGATGAAGATGAAC
AACCACAAGTACCCATTCCAGAGCTATTAGACATCGATATTGTTAGTAAT
GAAACAN
Run BLAST on NCBI

protein sequence of TCONS_00038521-protein

>TCONS_00038521-protein ID=TCONS_00038521-protein|Name=TCONS_00038521-protein|organism=Clytia hemisphaerica|type=polypeptide|length=202bp
ERHNATLGNMIHKIVADTQCSIQNALVWAVSAKNSLSNNLGYSPNQLVFC
RNPNLPSTLTFQLPALRTKTSSEFIAEHLNALHSARRAFIQAESSKRIKT
ALSRQTQTTTSKEFNNGDTVYYKRNSDKDWHGPGTIIGIDGKVVVVRHGG
SVLRESPCHLTKVNKEKSESLPKEILIVPDEDEQPQVPIPELLDIDIVSN
ET
Run BLAST on NCBI

transcript from alignment at sc0001874:16379..16985

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038521 ID=TCONS_00038521|Name=TCONS_00038521|organism=Clytia hemisphaerica|type=transcript|length=607bp|location=Sequence derived from alignment at sc0001874:16379..16985 (Clytia hemisphaerica)
NTGTTTCATTACTAACAATATCGATGTCTAATAGCTCTGGAATGGGTACT
TGTGGTTGTTCATCTTCATCTGGTACGATAAGTATCTCCTTTGGTAATGA
TTCCGACTTTTCCTTATTTACTTTCGTCAAATGGCATGGACTTTCTCGTA
GAACACTTCCTCCGTGACGCACAACAACAACTTTTCCGTCAATTCCGATA
ATGGTACCTGGACCATGCCAGTCCTTGTCTGAATTTCGTTTGTAATAGAC
TGTATCTCCATTATTAAACTCTTTGCTCGTTGTTGTTTGTGTTTGACGTG
ATAACGCTGTTTTGATTCTTTTACTGGATTCAGCTTGGATAAATGCCCTT
CTAGCAGAGTGAAGAGCATTCAAATGTTCAGCAATAAATTCACTTGACGT
TTTCGTTCGAAGGGCTGGTAACTGAAATGTTAACGTGGATGGAAGATTTG
GGTTACGGCAGAAGACTAGTTGATTAGGACTGTATCCCAAGTTGTTGGAC
AAAGAATTTTTCGCACTTACAGCCCAAACAAGTGCATTCTGTATGGAGCA
CTGAGTATCAGCAACAATTTTGTGGATCATGTTTCCTAGAGTGGCATTAT
GTCTCTC

Coding sequence (CDS) from alignment at sc0001874:16379..16985

>TCONS_00038521 ID=TCONS_00038521|Name=TCONS_00038521|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at sc0001874:16379..16985 (Clytia hemisphaerica)
TGTTTCATTACTAACAATATCGATGTCTAATAGCTCTGGAATGGGTACTT
GTGGTTGTTCATCTTCATCTGGTACGATAAGTATCTCCTTTGGTAATGAT
TCCGACTTTTCCTTATTTACTTTCGTCAAATGGCATGGACTTTCTCGTAG
AACACTTCCTCCGTGACGCACAACAACAACTTTTCCGTCAATTCCGATAA
TGGTACCTGGACCATGCCAGTCCTTGTCTGAATTTCGTTTGTAATAGACT
GTATCTCCATTATTAAACTCTTTGCTCGTTGTTGTTTGTGTTTGACGTGA
TAACGCTGTTTTGATTCTTTTACTGGATTCAGCTTGGATAAATGCCCTTC
TAGCAGAGTGAAGAGCATTCAAATGTTCAGCAATAAATTCACTTGACGTT
TTCGTTCGAAGGGCTGGTAACTGAAATGTTAACGTGGATGGAAGATTTGG
GTTACGGCAGAAGACTAGTTGATTAGGACTGTATCCCAAGTTGTTGGACA
AAGAATTTTTCGCACTTACAGCCCAAACAAGTGCATTCTGTATGGAGCAC
TGAGTATCAGCAACAATTTTGTGGATCATGTTTCCTAGAGTGGCATTATG
TCTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023104XLOC_023104Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038521-exon-sc0001874-1491911889:16379..16985TCONS_00038521-exon-sc0001874-1491911889:16379..16985Clytia hemisphaericaexon
TCONS_00038521-exon-sc0001874-1510915933:16379..16985TCONS_00038521-exon-sc0001874-1510915933:16379..16985Clytia hemisphaericaexon
TCONS_00038521-exon-sc0001874-1575043694:16379..16985TCONS_00038521-exon-sc0001874-1575043694:16379..16985Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038521-proteinTCONS_00038521-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001874supercontigsc0001874:16379..16985 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52154	0.671318	2.09134	0.989943	2.5764	1.49308	0.790717	2.634	1.39745	1.28237	1.42401	1.33645	0.466171	0.950338	0.768867	0.673027	1.36565	0.390448	1.48841	0.909914	0.745764	1.02763	0.215096	0	0.91007	0.576201	0.23728	0	0.643913	0.415606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038521 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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