TCONS_00038519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038519
Unique NameTCONS_00038519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038519 ID=TCONS_00038519|Name=TCONS_00038519|organism=Clytia hemisphaerica|type=transcript|length=405bp
gtCTAAGTGTTCATGACATGACAAAGTCTTTAAATTTAGAAGGTAACTTC
CGTGTTCTCGTAGATCGTCTCAAAGCAATTTGATCGTCAGTGTTTGTTTC
AGTGACGGTCGGTAGCACGACAGTGTCTTGAATAATAACAGGCTCAGACC
GTAATACATGATCAGCTTTCTCGTTTTGCCGATCTGCGGGCATTACAGTC
CTTGATGTAACAGTAACAGTTTCTGGTTCTTCGTCTATCACGTTCCGAGT
TTGTTCAGAAACAGGACGAAGAAAGCGACGATTTCTGAGGGTTGTTCGTC
TACTACCGTCGACCAGTACACGATATTGATCATGAGGGAGCCTTTCAGAA
ATGATGCCTGTGCGATCCCATCGAAGAGGATGTTTACCATTTTGATTCTG
GATGG
Run BLAST on NCBI

protein sequence of TCONS_00038519-protein

>TCONS_00038519-protein ID=TCONS_00038519-protein|Name=TCONS_00038519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
IQNQNGKHPLRWDRTGIISERLPHDQYRVLVDGSRRTTLRNRRFLRPVSE
QTRNVIDEEPETVTVTSRTVMPADRQNEKADHVLRSEPVIIQDTVVLPTV
TETNTDDQIALRRSTRTRKLPSKFKDFVMS
Run BLAST on NCBI

transcript from alignment at sc0001874:10643..11047

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038519 ID=TCONS_00038519|Name=TCONS_00038519|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0001874:10643..11047 (Clytia hemisphaerica)
CCATCCAGAATCAAAATGGTAAACATCCTCTTCGATGGGATCGCACAGGC
ATCATTTCTGAAAGGCTCCCTCATGATCAATATCGTGTACTGGTCGACGG
TAGTAGACGAACAACCCTCAGAAATCGTCGCTTTCTTCGTCCTGTTTCTG
AACAAACTCGGAACGTGATAGACGAAGAACCAGAAACTGTTACTGTTACA
TCAAGGACTGTAATGCCCGCAGATCGGCAAAACGAGAAAGCTGATCATGT
ATTACGGTCTGAGCCTGTTATTATTCAAGACACTGTCGTGCTACCGACCG
TCACTGAAACAAACACTGACGATCAAATTGCTTTGAGACGATCTACGAGA
ACACGGAAGTTACCTTCTAAATTTAAAGACTTTGTCATGTCATGAACACT
TAGac

Coding sequence (CDS) from alignment at sc0001874:10643..11047

>TCONS_00038519 ID=TCONS_00038519|Name=TCONS_00038519|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0001874:10643..11047 (Clytia hemisphaerica)
ATCCAGAATCAAAATGGTAAACATCCTCTTCGATGGGATCGCACAGGCAT
CATTTCTGAAAGGCTCCCTCATGATCAATATCGTGTACTGGTCGACGGTA
GTAGACGAACAACCCTCAGAAATCGTCGCTTTCTTCGTCCTGTTTCTGAA
CAAACTCGGAACGTGATAGACGAAGAACCAGAAACTGTTACTGTTACATC
AAGGACTGTAATGCCCGCAGATCGGCAAAACGAGAAAGCTGATCATGTAT
TACGGTCTGAGCCTGTTATTATTCAAGACACTGTCGTGCTACCGACCGTC
ACTGAAACAAACACTGACGATCAAATTGCTTTGAGACGATCTACGAGAAC
ACGGAAGTTACCTTCTAAATTTAAAGACTTTGTCATGTCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023102XLOC_023102Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038519-proteinTCONS_00038519-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038519-exon-sc0001874-1491911889:10643..11047TCONS_00038519-exon-sc0001874-1491911889:10643..11047Clytia hemisphaericaexon
TCONS_00038519-exon-sc0001874-1510915933:10643..11047TCONS_00038519-exon-sc0001874-1510915933:10643..11047Clytia hemisphaericaexon
TCONS_00038519-exon-sc0001874-1575043694:10643..11047TCONS_00038519-exon-sc0001874-1575043694:10643..11047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001874supercontigsc0001874:10643..11047 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.204948	0.401018	0.933203	2.38012	2.37859	2.06011	1.08196	0.755746	1.96239	1.06868	0.880207	3.37552	0.454123	0.220603	0.0156788	0.278551	0.577249	0.4027	0.17501	0.256091	0.207541	0.188685	4.27551	2.45962	0	0	0.200906	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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